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Release 0.10.0 - #271

Merged

nsheff merged 32 commits into

masterfrom

dev

Sep 5, 2026

Merged

Release 0.10.0#271
nsheff merged 32 commits into
masterfrom
dev

Commits on Jul 19, 2026
- docs: fix broken URLs in README
  nsheff
  committed
  51995a8
Commits on Jul 20, 2026
- feat(refget): persist logical sequence-data size in rgstore.json
  nsheff
  committed
  c652304
- feat(refget): optional collection alias at FASTA import
  nsheff
  committed
  83c0135
Commits on Jul 21, 2026
- fix(refget): make orphan sequence GC linear instead of quadratic
  nsheff
  committed
  7ecc71f
- fix(refget): validate collection alias before committing the import
  nsheff
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  743d443
- Merge branch 'fix/orphan-gc-quadratic' into dev
  nsheff
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  59d442f
- Merge branch 'feat/store-size-tracking' into dev
  nsheff
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  3442a7e
- Merge branch 'feat/collection-alias-import' into dev
  nsheff
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  02fef6c
- perf(refget): hoist shard-dir rmdir out of orphan deletion loops
  nsheff
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  9bd1fc5
- Merge branch 'fix/orphan-rmdir-hoist' into dev
  nsheff
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  6db3823
Commits on Jul 27, 2026
- refget: rename residency stats fields, add per-run import counters
  nsheff
  committed
  aa7f78e
- refget: add `gtars refget export` CLI and unwrapped FASTA output
  nsheff
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  5fbdacf
Commits on Jul 28, 2026
- feat(refget): lock, atomic index writes, and merge-at-commit for RefgetStore
  nsheff
  committed
  65a8caf
Commits on Jul 29, 2026
- refget: commit only what this handle changed; drop tombstones
  nsheff
  committed
  6a84792
Commits on Aug 6, 2026
- remove dead error in overlaps
  nsheff
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  c74f8ea
Commits on Aug 14, 2026
- Skip FHR sidecar write when content is unchanged
  nsheff
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  329c6d3
Commits on Aug 27, 2026
- Fix encodedByteRange return type in wasm JS types
  nsheff
  committed
  485a9bf
Commits on Sep 3, 2026
- refget: allow packed inserts in Encoded mode
  nsheff
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  18af622
Commits on Sep 4, 2026
- Trim refget read syscalls: fd-cache and statx
  nsheff
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  90490ff
Commits on Sep 5, 2026
- Resolve collection alias in refget export, see #270
  nsheff
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  e997036
- Use collection headers in refget export, see #270
  nsheff
  committed
  581f902
- Use collection names in get_sequence_by_name
  nsheff
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  8759c5d
- drop full debuginfo
  nsheff
  committed
  1bef873
- Bump versions for 0.10.0 release
  nsheff
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  92ac2ba
- Regenerate gtars-node lockfile for 0.8.0
  nsheff
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  b33795b
- Serialize stale lock breaking via break marker
  nsheff
  committed
  fdec8fb
- Harden refget store commit and GC paths
  nsheff
  committed
  5c770cb
- Load only the exported collection in refget export
  nsheff
  committed
  1c5e771
- Add collection_alias to Python FASTA import
  nsheff
  committed
  2bb1894
- Note review fixes in 0.10.0 changelog
  nsheff
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  72c229f
- Drop Changes.md; changelog lives in bedbase docs
  nsheff
  committed
  8368933
- Document changelog location in RELEASING.md
  nsheff
  committed
  6869381

Commits

Commits on Jul 19, 2026

Commits on Jul 20, 2026

Commits on Jul 21, 2026

Commits on Jul 27, 2026

Commits on Jul 28, 2026

Commits on Jul 29, 2026

Commits on Aug 6, 2026

Commits on Aug 14, 2026

Commits on Aug 27, 2026

Commits on Sep 3, 2026

Commits on Sep 4, 2026

Commits on Sep 5, 2026