Refresh packages to use new msprime etc

[jeromekelleher]

Uses a range of just-published tskit-dev packages.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 91.92%. Comparing base (85f754a) to head (c6b22e4).
⚠️ Report is 2 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3415      +/-   ##
==========================================
- Coverage   91.92%   91.92%   -0.01%     
==========================================
  Files          37       37              
  Lines       32054    32054              
  Branches     5123     5123              
==========================================
- Hits        29467    29465       -2     
- Misses       2260     2262       +2     
  Partials      327      327              

Flag	Coverage Δ
C	82.64% <ø> (ø)
c-python	77.56% <ø> (ø)
python-tests	96.53% <ø> (-0.03%)	⬇️
python-tests-no-jit	33.42% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Components	Coverage Δ
Python API	98.86% <ø> (-0.03%)	⬇️
Python C interface	91.20% <ø> (ø)
C library	88.82% <ø> (ø)

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