T2T-Epigenetics

Repository for analysis scripts for the T2T Epigenetics manuscript

Name		Name	Last commit message	Last commit date
Latest commit History 34 Commits
GM12878_Liftover		GM12878_Liftover
TE		TE
bisulfite		bisulfite
cutnrun		cutnrun
encode		encode
frequencyPlots		frequencyPlots
gene_analysis		gene_analysis
gene_expression		gene_expression
loglik_analysis		loglik_analysis
make_bsgenome_package		make_bsgenome_package
methylation_calling		methylation_calling
nanonome		nanonome
panX_analysis		panX_analysis
panelPlots		panelPlots
readPlots		readPlots
repeatmasker		repeatmasker
rrbs_t2t		rrbs_t2t
satellite_analysis		satellite_analysis
singlread		singlread
utils		utils
210421_CountCpGs_AG.R		210421_CountCpGs_AG.R
210524_CountCpGs_AG.R		210524_CountCpGs_AG.R
MakeCGIs.R		MakeCGIs.R
README.md		README.md
Telomere_CGIs.R		Telomere_CGIs.R

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