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Welcome to the FactorBase wiki! This is an overview of key procedures, their dependencies and their functionality.

System Flow

RunBB.java is the main file calling subroutines. Here's roughly what it does.

1. Run MakeSetup to create db_setup. The setup database contains two tables that can be modified (by a user or program).

   1. FunctorSet. By default, this is the complete set of functor node. Functors can be deleted to be excluded from analysis.
   2. Expansions. By default, this is empty. Population variables can be added to expand contingency tables, so that the contingency tables contains one group for each tuple of individuals formed from the population variables in Expansions.

2. Run transfer.sql to transfer metadata to db_bn.

3. Run lattice_generator_short_rnid

4. Add original_rnid.sql

5. Run Fnodes.sql (to be renamed metadata.sql)

6. Run queries.sql (to be renamed metaqueries.sql)

7. Run metadata_bayesnet (makes model management tables, rename model_manager)

8. Run ADT_queries.sql (metaqueries for Rchains).