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perf(align): resolve the genome storage once per extension and junction scan CI #612: Pull request #257 opened by BenjaminDEMAILLE
6m 36s BenjaminDEMAILLE:perf/genome-seqview
BenjaminDEMAILLE:perf/genome-seqview
6m 36s
perf(align): memoize the junction-position scan inside stitchWindowAligns CI #611: Pull request #256 opened by BenjaminDEMAILLE
6m 29s BenjaminDEMAILLE:perf/junction-memo
BenjaminDEMAILLE:perf/junction-memo
6m 29s
test(determinism): lock output against map iteration order (#210) CI #610: Pull request #242 synchronize by BenjaminDEMAILLE
6m 6s audit/sj-iteration-order
audit/sj-iteration-order
6m 6s
docs(roadmap): record where the port stands, measured CI #609: Pull request #255 opened by BenjaminDEMAILLE
5m 45s docs/port-status
docs/port-status
5m 45s
fix(align): a soft-clipped variant of a pair is not a second locus CI #608: Pull request #254 opened by BenjaminDEMAILLE
6m 25s fix/pair-subset-loci
fix/pair-subset-loci
6m 25s
test: yeast-tier differential in a minute, and a SAM agreement tool CI #607: Pull request #253 opened by BenjaminDEMAILLE
6m 27s test/yeast-tier
test/yeast-tier
6m 27s
fix(filter): take outFilterMismatchNoverLmax over the mapped length CI #606: Pull request #252 opened by BenjaminDEMAILLE
6m 44s fix/mismatch-nover-lmax
fix/mismatch-nover-lmax
6m 44s
docs: retire CLAUDE.md, keeping what is still true CI #605: Pull request #251 opened by BenjaminDEMAILLE
7m 16s docs/retire-claude-md
docs/retire-claude-md
7m 16s
ci: opt-in benchmark workflow, micro and end-to-end CI #604: Pull request #250 opened by BenjaminDEMAILLE
6m 52s ci/speed-benchmarks
ci/speed-benchmarks
6m 52s
ci: opt-in large-dataset differential against STAR CI #603: Pull request #249 opened by BenjaminDEMAILLE
5m 32s ci/large-dataset-tests
ci/large-dataset-tests
5m 32s
bench: add a divan harness and the first hot-path benchmarks CI #602: Pull request #248 opened by BenjaminDEMAILLE
6m 24s feat/bench-harness
feat/bench-harness
6m 24s
fix(stats): paired-end unmapped reads split between too short and other CI #601: Pull request #247 opened by BenjaminDEMAILLE
6m 40s fix/unmapped-other-bucket
fix/unmapped-other-bucket
6m 40s
chore(deps): bump thiserror from 2.0.19 to 2.0.20 CI #600: Pull request #230 synchronize by dependabot Bot
10m 51s dependabot/cargo/thiserror-2.0.20
dependabot/cargo/thiserror-2.0.20
10m 51s
chore(deps): bump bstr from 1.13.0 to 1.13.1 CI #599: Pull request #229 synchronize by dependabot Bot
12m 16s dependabot/cargo/bstr-1.13.1
dependabot/cargo/bstr-1.13.1
12m 16s
chore(deps): bump noodles-bgzf from 0.49.0 to 0.51.0 CI #598: Pull request #221 synchronize by dependabot Bot
12m 20s dependabot/cargo/noodles-bgzf-0.51.0
dependabot/cargo/noodles-bgzf-0.51.0
12m 20s
chore(deps): bump noodles from 0.113.0 to 0.116.0 CI #597: Pull request #220 synchronize by dependabot Bot
13m 2s dependabot/cargo/noodles-0.115.0
dependabot/cargo/noodles-0.115.0
13m 2s
cargo in / for caps-sa - Update #1543068679 Dependabot Updates #120: by dependabot Bot
6m 28s main
main
6m 28s
cargo in / for thiserror - Update #1543068658 Dependabot Updates #119: by dependabot Bot
6m 15s main
main
6m 15s
cargo in / for bstr - Update #1543068657 Dependabot Updates #118: by dependabot Bot
3m 22s main
main
3m 22s
cargo in / for noodles - Update #1543068651 Dependabot Updates #117: by dependabot Bot
2m 35s main
main
2m 35s
cargo in / for noodles-bgzf - Update #1543068647 Dependabot Updates #116: by dependabot Bot
2m 42s main
main
2m 42s
perf(build): enable geometric LCP memoization for genome indexing (#228) CI #596: Commit 3713dfb pushed by rob-p
9m 26s main
main
9m 26s
perf(build): enable geometric LCP memoization for genome indexing (#228) Release #92: Commit 3713dfb pushed by rob-p
7m 2s main
main
7m 2s
perf(build): enable geometric LCP memoization for genome indexing CI #595: Pull request #228 synchronize by rob-p
6m 20s codex/geometric-memoization
codex/geometric-memoization
6m 20s
perf(build): enable geometric LCP memoization for genome indexing CI #594: Pull request #228 synchronize by rob-p
6m 56s codex/geometric-memoization
codex/geometric-memoization
6m 56s