Update the Smart API config

Dockerfile

@@ -0,0 +1,23 @@
+FROM php:7-apache
+
+# MAINTAINER Alexander Malic <[email protected]>
+# MAINTAINER Vincent Emonet <[email protected]>
+# MAINTAINER Michel Dumontier <[email protected]>
+
+ARG APP_ENV=prod
+
+WORKDIR /tmp
+
+RUN apt-get update && apt-get install -y zip && \
+  a2enmod rewrite && \
+  a2enmod headers && \
+  echo "Header set Access-Control-Allow-Origin \"*\"" >> /etc/apache2/sites-available/000-default.conf && \
+  php -r "readfile('http://getcomposer.org/installer');" | php -- --install-dir=/usr/bin/ --filename=composer
+
+
+WORKDIR /var/www/html
+
+COPY ./slim-server/SwaggerServer/ .  
+
+RUN composer install
+

README.md

@@ -11,3 +11,19 @@ Code stub was generated with [Swagger CodeGen](https://github.com/swagger-api/sw
 Modified the composer.json to include MonoLog and ElasticSearch libraries
 
 Code currently in index.php file
+
+## Deploy prefixcommons API
+
+Use the start.sh scripts to deploy on node2 (will use `/data/prefixcommons` as working folder):
+
+```bash
+./start.sh
+```
+
+> It will create the required folders, start docker containers and init database
+
+## Docker compose
+
+Docker compose is not finished
+
+The goal is to avoid needing to perform bash operations by preparing the httpd and elasticsearch images

docker-compose/docker-compose.yml

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+version: "2"
+
+networks:
+  net1: {}
+
+services:
+  nginx-proxy:
+    image: jwilder/nginx-proxy:test
+    volumes:
+      - /var/run/docker.sock:/tmp/docker.sock:ro
+    networks:
+      - net1
+
+  es:
+    build: ./prefixcommons-elasticsearch
+    expose:
+      - "9200"
+      - "9300"
+    environment:
+      WEB_PORTS: 9200
+      VIRTUAL_HOST: www.prefixcommonsx.org
+    networks:
+      - net1
+
+  webapp:
+    build: ./prefixcommons-httpd
+    expose:
+      - "80"
+    environment:
+      WEB_PORTS: 80
+      VIRTUAL_HOST: www.prefixcommonsx.org
+    networks:
+      - net1

docker-compose/prefixcommons-elasticsearch/Dockerfile

@@ -0,0 +1,8 @@
+FROM elasticsearch:latest
+
+ADD ./config/elasticsearch.yml /usr/share/elasticsearch/config/elasticsearch.yml
+
+CMD ["elasticsearch"]
+
+EXPOSE 80
+EXPOSE 9300

docker-compose/prefixcommons-elasticsearch/config/elasticsearch.yml

@@ -0,0 +1,98 @@
+# ======================== Elasticsearch Configuration =========================
+#
+# NOTE: Elasticsearch comes with reasonable defaults for most settings.
+#       Before you set out to tweak and tune the configuration, make sure you
+#       understand what are you trying to accomplish and the consequences.
+#
+# The primary way of configuring a node is via this file. This template lists
+# the most important settings you may want to configure for a production cluster.
+#
+# Please see the documentation for further information on configuration options:
+# <http://www.elastic.co/guide/en/elasticsearch/reference/current/setup-configuration.html>
+#
+# ---------------------------------- Cluster -----------------------------------
+#
+# Use a descriptive name for your cluster:
+#
+cluster.name: "elasticsearch-cors"
+#
+# ------------------------------------ Node ------------------------------------
+#
+# Use a descriptive name for the node:
+#
+node.name: "node-1"
+#
+# Add custom attributes to the node:
+#
+# node.rack: r1
+#
+# ----------------------------------- Paths ------------------------------------
+#
+# Path to directory where to store the data (separate multiple locations by comma):
+#
+# path.data: /path/to/data
+#
+# Path to log files:
+#
+# path.logs: /path/to/logs
+#
+# ----------------------------------- Memory -----------------------------------
+#
+# Lock the memory on startup:
+#
+# bootstrap.mlockall: true
+#
+# Make sure that the `ES_HEAP_SIZE` environment variable is set to about half the memory
+# available on the system and that the owner of the process is allowed to use this limit.
+#
+# Elasticsearch performs poorly when the system is swapping the memory.
+#
+# ---------------------------------- Network -----------------------------------
+#
+# Set the bind address to a specific IP (IPv4 or IPv6):
+#
+# network.host: 192.168.0.1
+network.host: 0.0.0.0
+#
+# Set a custom port for HTTP:
+#
+http.port: 80
+#
+# For more information, see the documentation at:
+# <http://www.elastic.co/guide/en/elasticsearch/reference/current/modules-network.html>
+#
+# --------------------------------- Discovery ----------------------------------
+#
+# Pass an initial list of hosts to perform discovery when new node is started:
+# The default list of hosts is ["127.0.0.1", "[::1]"]
+#
+# discovery.zen.ping.unicast.hosts: ["host1", "host2"]
+#
+# Prevent the "split brain" by configuring the majority of nodes (total number of nodes / 2 + 1):
+#
+# discovery.zen.minimum_master_nodes: 3
+#
+# For more information, see the documentation at:
+# <http://www.elastic.co/guide/en/elasticsearch/reference/current/modules-discovery.html>
+#
+# ---------------------------------- Gateway -----------------------------------
+#
+# Block initial recovery after a full cluster restart until N nodes are started:
+#
+# gateway.recover_after_nodes: 3
+#
+# For more information, see the documentation at:
+# <http://www.elastic.co/guide/en/elasticsearch/reference/current/modules-gateway.html>
+#
+# ---------------------------------- Various -----------------------------------
+#
+# Disable starting multiple nodes on a single system:
+#
+# node.max_local_storage_nodes: 1
+#
+# Require explicit names when deleting indices:
+#
+# action.destructive_requires_name: true
+
+http.cors.enabled: true
+http.cors.allow-origin: "*"

docker-compose/prefixcommons-httpd/Dockerfile

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+FROM httpd
+
+MAINTAINER Alexander Malic <[email protected]>
+
+RUN apt-get update \
+  && apt-get install -y git netcat curl \
+  && cd /opt \
+  && git clone https://github.com/amalic/webapp-es-ang.git \
+  && cp -r ./webapp-es-ang/html/* /usr/local/apache2/htdocs/ \
+  && git clone https://github.com/prefixcommons/data-ingest.git \
+  && cd ./webapp-es-ang/es \
+  && mv ../../data-ingest/json/lsregistry.json . \
+  && while ! echo exit | netcat es 9200; do sleep 1; done \
+  && curl -XDELETE http://es:9200/prefixcommons > /dev/null \
+  && curl -XPUT http://es:9200/prefixcommons -d  @mappings.json > /dev/null \
+  && curl -XPUT http://es:9200/_bulk?pretty --data-binary @lsregistry.json > /dev/null

nginx.conf

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+events {
+    worker_connections  1024;
+}
+
+
+http {
+    server {
+        listen 8080;
+        server_name elastic.prefixcommons.org;
+
+        rewrite ^/(.*) /$1 break;
+        proxy_ignore_client_abort on;
+        proxy_set_header  X-Real-IP  $remote_addr;
+        proxy_set_header  X-Forwarded-For $proxy_add_x_forwarded_for;
+        proxy_set_header  Host $http_host;
+
+        proxy_set_header Access-Control-Allow-Origin "*";
+
+        location ~ ^(/|/_aliases|.*/_search|.*/_mapping|/_cluster.*|/_status.*|/_nodes)$ {
+            limit_except GET POST OPTIONS {
+                    deny  all;
+            }
+            proxy_pass http://elasticsearch:9200;
+            proxy_pass_request_headers on;
+        }
+
+        location / {
+            # Auth: https://docs.nginx.com/nginx/admin-guide/security-controls/configuring-http-basic-authentication/
+            limit_except GET {
+                    deny  all;
+            }
+            auth_basic           "Administrator’s Area";
+            auth_basic_user_file /etc/nginx/.htpasswd; 
+            proxy_pass http://elasticsearch:9200;
+            proxy_pass_request_headers on;
+        }
+    }
+}