CITP_diversity

Genetic diversity estimates for the Caenorhabditis Intervention Testing Program diversity panel

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
00_get_SRA.srun		00_get_SRA.srun
01_rename_samples.srun		01_rename_samples.srun
02_fastqc.srun		02_fastqc.srun
03_multiqc.srun		03_multiqc.srun
04_define_adapters.srun		04_define_adapters.srun
05_skewer_nextera.srun		05_skewer_nextera.srun
05_skewer_nextera_SE.srun		05_skewer_nextera_SE.srun
05_skewer_truseq.srun		05_skewer_truseq.srun
06_fastqc.srun		06_fastqc.srun
07_index_ref.srun		07_index_ref.srun
08_map_reads.srun		08_map_reads.srun
08_map_reads_SE.srun		08_map_reads_SE.srun
09_picard_dedup_rename.srun		09_picard_dedup_rename.srun
10_merge_strain_ded_bams.srun		10_merge_strain_ded_bams.srun
11_rename_merged.srun		11_rename_merged.srun
12_GATK.srun		12_GATK.srun
13_filter_variants_estimate_pi.srun		13_filter_variants_estimate_pi.srun
14_filter_variants_estimate_pi_CORE.srun		14_filter_variants_estimate_pi_CORE.srun
15_coverage_per_sample.srun		15_coverage_per_sample.srun
16_popvae.srun		16_popvae.srun
CITP_SRA_list.txt		CITP_SRA_list.txt
CITP_SRA_names.txt		CITP_SRA_names.txt
CITP_diversity_Fig1.R		CITP_diversity_Fig1.R
CITP_origin_locations.csv		CITP_origin_locations.csv
LICENSE		LICENSE
README.md		README.md

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