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Release 0.12.9 - #148

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khoroshevskyi merged 5 commits into
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dev
Dec 1, 2025
Merged

khoroshevskyi merged 5 commits into
masterfrom
dev

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@khoroshevskyi

@khoroshevskyi khoroshevskyi commented Nov 6, 2025 •

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Changes:

  • Improved error handling
  • Fixed incorrect return for processed series metadata

TODO:

  • Update version
  • Update changelog

@khoroshevskyi
khoroshevskyi requested a review from Copilot November 6, 2025 01:41

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Pull Request Overview

This PR adds robust error handling to the main processing loop in fetch_all() by wrapping the accession processing logic in a try-except block. This allows the tool to gracefully handle failures when processing individual accessions and continue with the remaining ones.

  • Wraps the entire accession processing logic (lines 404-537) in a try-except block
  • Logs a warning message when an accession fails to process
  • Continues processing remaining accessions after an error occurs

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Comment thread geofetch/geofetch.py Outdated
Comment thread geofetch/geofetch.py
Comment thread geofetch/geofetch.py Outdated
Comment thread geofetch/geofetch.py Outdated
@khoroshevskyi
khoroshevskyi merged commit ffbd29c into master Dec 1, 2025
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3 participants