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@KumarLabJax The Kumar Lab at JAX

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    37 repositories

    • JABS-behavior-classifier

      Public
      Behavior Classifier Component from the Jax Animal Behavior System
      Python
      •
      MIT License
      •5•28•3•3•Updated Nov 4, 2026Nov 4, 2026

    • ndx-jabs

      Public
      NWB extension for JABS algorithm internals (instance segmentation contours)
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 15, 2026Oct 15, 2026

    • getting-started-with-jabs

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Oct 14, 2026Oct 14, 2026

    • JABS-recording-control-server

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Oct 14, 2026Oct 14, 2026

    • JABS-device-client

      Public
      C++
      •
      Other
      •0•1•0•0•Updated Oct 14, 2026Oct 14, 2026

    • gaitanalysis

      Public
      Perform gait analysis on pose estimation files.
      Python
      •
      MIT License
      •5•2•1•1•Updated Oct 7, 2026Oct 7, 2026

    • mouse-tracking-runtime

      Public
      Runtime environment for Kumar Lab trained mouse tracking models
      Python
      •
      Other
      •0•1•6•5•Updated Sep 17, 2026Sep 17, 2026

    • JABS_nextflow_postprocess

      Public
      R
      •1•0•0•1•Updated Sep 9, 2026Sep 9, 2026

    • pose-qc-dashboard

      Public
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 25, 2026Jun 25, 2026

    • JABS-postprocess

      Public
      Resources to assist with interacting with JABS classifier predictions
      Python
      •
      Other
      •0•1•6•5•Updated Jun 16, 2026Jun 16, 2026

    • cfde-multiomics

      Public
      ▎ Workshop materials for integrating public multi-omics data (GTEx, RNA-seq, metabolomics) to generate mechanistic hypotheses, using LIF and cancer cachexia as …
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 29, 2026Apr 29, 2026

    • KumarLab-LatexTemplate-light

      Public
      A lightweight LaTeX template for JAX & KumarLab papers. No font installs required.
      TeX
      •
      Other
      •1•1•0•0•Updated Apr 12, 2026Apr 12, 2026

    • JABS-feature-experiments

      Public
      Feature representations for lab animal behavior modeling
      Python
      •
      Other
      •0•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • mmpose-experiments

      Public
      Python
      •
      Other
      •0•0•1•0•Updated Mar 27, 2026Mar 27, 2026

    • Unsupervised-vFI

      Public
      Data and scripts for reproducing results in the Unsupervised-vFI manuscript
      R
      •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

    • B6JDO-KPMS-Pipeline

      Public
      Keypoint-MoSeq (KPMS) training pipeline for B6J/DO video data. Used in the Unsupervised-vFI manuscript.
      Python
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • Migraine

      Public
      Scripts for generating results for the migraine project.
      R
      •
      MIT License
      •1•0•0•0•Updated Jan 6, 2026Jan 6, 2026

    • Lepr_dax3

      Public
      Analysis of Lepr mice in Envision DAX3
      0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • ptz-seizure-supervised

      Public
      Data and scripts for reproducing results in the seizure manuscript
      R
      •
      Other
      •0•0•1•0•Updated Oct 23, 2025Oct 23, 2025

    • NextFlow_NTGDataAnalysisApp_v0.2

      Public
      An app to alalyze the nitroglycerin data from Nextflow
      R
      •
      MIT License
      •1•0•0•1•Updated Sep 30, 2025Sep 30, 2025

    • JABS-data-pipeline

      Public
      General overview of JABS, including hardware, wiki, and links to associated software components
      Other
      •1•5•1•0•Updated Sep 15, 2025Sep 15, 2025

    • vFI-features

      Public
      Code for running features for the visual FI model
      Python
      •0•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • DO-vFI-modeling

      Public
      R
      •
      Other
      •0•1•0•0•Updated Mar 5, 2025Mar 5, 2025

    • MouseSleep

      Public
      Sleep state prediction for mice and rodents.
      Python
      •
      MIT License
      •1•1•2•0•Updated Jun 4, 2024Jun 4, 2024

    • visual-mouse-weight

      Public
      R
      •
      MIT License
      •0•2•0•0•Updated May 2, 2024May 2, 2024

    • KOMP2022

      Public
      R
      •0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • QTL_analysis_for_Crichton

      Public
      R
      •0•0•0•0•Updated Apr 25, 2023Apr 25, 2023

    • JABS-recording-ui

      Public
      TypeScript
      •
      Other
      •0•1•0•0•Updated Mar 3, 2023Mar 3, 2023

    • vFI-modeling

      Public
      R
      •0•1•1•0•Updated Oct 26, 2022Oct 26, 2022

    • LimeLightFrameRate

      Public
      Compare LimeLight Frame Rates
      0•0•0•0•Updated Jan 19, 2022Jan 19, 2022
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