Selphi 2.0.0-rc1 (pre-release)

Prebuilt Linux x86_64 binaries for Selphi 2.0.0 (branch new_version/selphi2_cluster, commit 9d72844).

Pre-release. master and the Latest release remain Selphi 1.5.3. This build is provided for collaborator testing of Selphi 2 and is not the stable release.

Which binary to use

• selphi-linux-x86_64 — dynamic build, requires glibc >= 2.39, fastest. Check your system with ldd --version.
• selphi-linux-x86_64-musl — fully static, no dependencies, runs on any Linux (including older HPC glibc). ~1.6x slower in the HMM step; negligible for small reference panels.

No Rust or system dependencies required.

# example: static build (works everywhere)
wget https://github.com/omicsedge/selphi/releases/download/2.0.0-rc1/selphi-linux-x86_64-musl
chmod +x selphi-linux-x86_64-musl
./selphi-linux-x86_64-musl --help

Verify integrity:

wget https://github.com/omicsedge/selphi/releases/download/2.0.0-rc1/SHA256SUMS.txt
sha256sum -c SHA256SUMS.txt

Docs: https://github.com/omicsedge/selphi/blob/new_version/selphi2_cluster/README.md
Method reference: Scientific Reports 2026, https://doi.org/10.1038/s41598-026-58420-2

1.5.3 improved build compatibility and chunk_size parameter

What's Changed

• Update README.md by @getovahit in #52
• chunk_size for ref panel by @adrianodemarino in #54

New Contributors

• @getovahit made their first contribution in #52

Full Changelog: 1.5.2...1.5.3

1.5.2 remove stochasticity

What's Changed

• fix: sort stable by @sandra-selfdecode in #51

Full Changelog: 1.5.1...1.5.2

1.5.1 keep original IDs

What's Changed

• feat: store original IDs in srp by @sandra-selfdecode in #49
• fix: row_stop logic by @sandra-selfdecode in #50

Full Changelog: 1.4.2...1.5.1

1.4.2 bugfix

What's Changed

• fix: add suffix by @sandra-selfdecode in #48

Full Changelog: 1.4.1...1.4.2

1.4.1 add Docker CD, bugfix

What's Changed

• fix: srp index error by @sandra-selfdecode in #44
• fix: index targets vcf by @sandra-selfdecode in #45
• chore: add docker pull command by @sandra-selfdecode in #46
• fix: determine last chunk by @sandra-selfdecode in #47

Full Changelog: 1.3.0...1.4.1

1.3.0

What's Changed

• feat: reduced hmm memory usage by @sandra-selfdecode in #43

Full Changelog: 1.2.6...1.3.0

1.2.6 reduce disk usage

What's Changed

• Feat/reduce disk usage by @sandra-selfdecode in #42

Full Changelog: 1.2.5...1.2.6

1.2.5

What's Changed

• chore: pin numpy 1.26.4 by @sandra-selfdecode in #41

Full Changelog: 1.2.4...1.2.5

1.2.4 update cyvcf2 dependency

What's Changed

• chore: cyvcf2 0.31.1 by @sandra-selfdecode in #40

Full Changelog: 1.2.3...1.2.4