V1 fixes

[btmonier]

Summary

Adds initial framework and build scripts for local, non-Linux testing environments

Features

• Add Docker dev stack to bake AnchorWave, PHGv2, and related tooling for Linux.
• Add scripts for building Docker image and testing (unit and integration)
• Update build.gradle.kts for different testing approaches
• Add new documentation to reflect clikt commands
• Add some initial tests to be fleshed out in a future update
• Add smallseq test data
• Add testing component to PR checks

Bug Fixes

• None

Breaking Changes

• None

Checklist

• I have updated the version in build.gradle.kts (REQUIRED - see below)
• I have tested these changes locally
• I have added/updated tests for new functionality
• I have updated documentation (if applicable)
• Breaking changes are clearly documented above