rTASSEL + Docker

Docker image for rTASSEL published as maizegenetics/rtassel_docker on Docker Hub.

The Dockerfile and GitHub Action that builds and pushes this image live in the rTASSEL repository:

• docker/Dockerfile
• .github/workflows/docker-publish.yaml

This repo is kept as a lightweight pointer for discoverability. Do not duplicate Docker Hub publish workflows here—that would race with rTASSEL and push twice.

Image contents

• RStudio Server
• CRAN packages: ape, cli, knitr, plotly, rlang, tidyverse, vctrs
• Bioconductor packages: BiocStyle, AnnotationDbi, GenomicFeatures, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment

When images are published

On each v*.*.* tag push to rTASSEL, the Publish Docker image workflow pushes maizegenetics/rtassel_docker:<tag> and :latest. See rTASSEL CONTRIBUTING.md for required Docker Hub secrets.

Local build

Clone rTASSEL, check out the desired tag, then from the repo root:

docker build --build-arg RTASSEL_TAG=v0.12.0 -f docker/Dockerfile -t rtassel:local .

The Hub image maizegenetics/rtassel is deprecated; use maizegenetics/rtassel_docker instead.