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Generalize 6D canonical integrator to arbitrary curvilinear coordinates (VMEC)#408

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Generalize 6D canonical integrator to arbitrary curvilinear coordinates (VMEC)#408
krystophny wants to merge 56 commits into
refactor/shared-symplectic-corefrom
feature/simple-6d-port

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@krystophny krystophny commented Jun 19, 2026

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Risk tier

  • T3: physics, output behavior, coordinate convention

Correctness contract

Intended behavior change

Add orbit_cpp_canonical: a curvilinear canonical-midpoint 6D integrator on the
analytic tokamak, the SIMPLE port of the three Egger-Feiel thesis
discrete-variational schemes. It supersedes the Cartesian orbit_cpp_pauli
discretization (wrong scheme: flat-metric Pauli, not the thesis curvilinear
canonical midpoint).

Three models, integer-dispatched (GPU-portable, !$acc routine seq, fixed-size
6 state, analytic Jacobian, no class()/proc-ptr in the hot path):
MODEL_CP (full charged particle, dt=1), MODEL_CPP_SYM (Pauli symplectic
midpoint, H+mu|B|, dt=80), MODEL_CPP_VAR (Pauli variational midpoint, discrete
Euler-Lagrange, dt=800). The 6x6 Newton system reuses rk_solve (device LU)
from orbit_rk_core.

field_can_test gains eval_field_correct_test, the exact-curl analytic field
(B^k = eps^ijk A_j,i/sqrtg, |B| = sqrt(g_ij B^i B^j)) the 6D models need.
A, dA, d2A match eval_field_test; B, dB, h differ.

Behavior that must not change

The guiding-center integrator and orbit_symplectic are untouched. The GC
symplectic tests (test_sympl*, test_orbit_symplectic_base) and the existing
CPP/full-orbit tests pass unchanged.

Coordinate / unit conventions

Canonical curvilinear (r, theta, phi) with covariant p. Thesis normalization
e = m = c = 1 (the module uses a local c=1, not the CGS speed of light in
util, which would null the magnetic coupling). Metric
g = diag(1, r^2, (R0 + r cos theta)^2).

Numerical invariants

CPP-sym/var conserve energy with a bounded, dt-independent oscillation (no
secular drift) and conserve the canonical toroidal momentum p_phi exactly
(axisymmetric field). mu is a fixed parameter for the CPP models.

Tests added

  • unit: test_cpp_canonical (per-step oracle reproduction, energy bound,
    dt-independent plateau, p_phi invariant on the GC banana, analytic==FD
    Jacobian for all three models)

Golden-record impact

  • unchanged

New self-contained models on the analytic tokamak; no VMEC production path or
golden record is touched.

Failure modes considered

The python reference metric drops the factor r in d g_33/d theta. Using it
breaks the symplectic energy bound. The Fortran uses the correct analytic
derivative; the failing-before/passing-after contrast is in Verification. The
python field d|B|/d theta also omits a chain-rule term; the residual keeps the
python form to reproduce the oracle bit-for-bit, and the O(mu) Jacobian term
differentiates that same dBmod by finite difference for consistency.

Manual validation

Oracle regenerated headless from field_correct_test.field with
scipy.optimize.root(hybr, tol=1e-12), numpy 2.4.6 / scipy 1.17.1, corrected
metric. The Fortran reproduces every reference number.

Verification

Build: make CONFIG=Fast (gfortran, Fast profile).

Failing-before (buggy python metric: d g_33/d theta = -2 (R0+r cos th) sin th,
factor r dropped), injected into the same kernel:

CP max|dE/E0| (1000 steps) =   3.9519E-01
FAIL  CP step1  maxerr=  1.04E-06 tol=  1.00E-10
FAIL  CPPsym step10  maxerr=  2.75E-02 tol=  1.00E-10

Passing-after (correct metric d g_33/d theta = -2 r (R0+r cos th) sin th):

PASS  CP step1  maxerr=  2.22E-16
PASS  CP step5  maxerr=  2.22E-16
  CP max|dE/E0| (1000 steps) =   1.2450E-02
PASS  CPPsym step1  maxerr=  9.15E-17
PASS  CPPsym step10  maxerr=  5.55E-15
  CPPsym max|dE/E0| =   9.9928E-04  end-drift =  -1.2791E-05
PASS  CPPsym energy bound ~1e-3
PASS  CPPvar step2000  maxerr=  2.83E-08
  CPPsym plateau dt=80  max|dE/E0|=9.9928E-04
  CPPsym plateau dt=40  max|dE/E0|=1.0004E-03
  CPPsym plateau dt=20  max|dE/E0|=1.0008E-03
  CPPsym plateau dt=10  max|dE/E0|=1.0009E-03
PASS  CPPsym plateau dt-independent (no secular growth)
  banana r band = 3.0977E-02  p_phi drift = 0.0000E+00
PASS  banana p_phi invariant (<1e-12)
PASS  CP-jac analytic==FD       (max|Jan-Jfd| = 2.04E-10)
PASS  CPPsym-jac analytic==FD   (max|Jan-Jfd| = 1.60E-08)
PASS  CPPvar-jac analytic==FD   (max|Jan-Jfd| = 5.92E-11)
 ALL CANONICAL 6D PORT TESTS PASSED

No GC regression (ctest -R 'test_sympl|test_orbit_symplectic_base|test_cpp|test_fo_symplectic|test_full_orbit|test_orbit_model_dispatch'):

100% tests passed, 0 tests failed out of 14

Full unit suite: 100% tests passed, 0 tests failed out of 24.


Update: arbitrary curvilinear coordinates on real VMEC

The diagonal analytic-tokamak metric is replaced by a full (non-diagonal) metric
path. orbit_cpp_canonical now carries g_ij, g^ij, dg_ij,k, covariant
A_i + gradient, |B| + gradient, h_i in a block_t and runs the general
Hamiltonian
q_dot^k = g^kj v_j/m, p_dot_k = qc A_j,k v^j + (m/2) g_ij,k v^i v^j - mu |B|,k.
The diagonal toroidal metric is the special case (off-diagonals zero), so the
analytic oracle is still reproduced bit-for-bit.

Two coordinate blocks, integer-dispatched:

  • COORD_TOK: analytic toroidal metric + exact-curl field, inline,
    !$acc routine seq, class-free, analytic Jacobian. GPU-portable.
  • COORD_VMEC (orbit_cpp_vmec_metric): full metric g_ij/g^ij and
    Christoffel symbols from libneo (issue Add Python venv setup script and fix pyproject.toml #322, feature/metric-christoffel),
    with metric derivatives from compatibility
    dg_ij,k = g_il Gamma^l_jk + g_jl Gamma^l_ik; covariant A_i and |B| from
    SIMPLE's native VMEC field. Host-side (libneo class() + 3D splines); Jacobian
    by FD of the same residual.

The fetched libneo is pinned to feature/metric-christoffel by default until #322
merges (override with -DLIBNEO_REF=...). SIMPLE's own
cartesian_coordinate_system_t gains the christoffel binding the new libneo
base interface requires (flat: all symbols zero).

Honest limitations

  • The COORD_VMEC residual/Jacobian are host-side, not GPU-offloadable: libneo's
    metric is class()-dispatched and reads 3D splines. The COORD_TOK leaf kernels
    remain !$acc routine seq.
  • The test stellarator is not axisymmetric, so the toroidal canonical momentum is
    not conserved; the test asserts the Hamiltonian energy and the radial band, not
    p_phi.
  • Near the magnetic axis s -> 0 the flux metric is singular and the
    central-difference field gradients lose accuracy; the VMEC test starts at
    mid-radius s = 0.3.

Verification (curvilinear / VMEC)

test_cpp_canonical (analytic oracle, generalized full-metric code):

PASS  CP step1  maxerr=  2.22E-16
PASS  CPPvar step2000  maxerr=  2.83E-08
PASS  CPPsym plateau dt-independent (no secular growth)
PASS  banana p_phi invariant (<1e-12)
PASS  CP-jac analytic==FD   (max|Jan-Jfd| = 2.04E-10)
 ALL CANONICAL 6D PORT TESTS PASSED

test_cpp_vmec (CP + big-step CPP on test_data/wout.nc, nfp=2 stellarator):

  metric relative asymmetry =   0.0000E+00
PASS  metric g g^-1 = I            (|g g^-1 - I| = 5.6E-16)
PASS  |B| at VMEC scale (1e4..1e5 G)   (|B| = 5.62E+04 G)
  CP VMEC max|dE/E0| =   1.8112E-07  end-drift =  -1.8112E-07
PASS  CP VMEC energy bounded (<1e-2)
PASS  CP VMEC no secular drift (<5e-3)
  CPP banana s band =   1.7594E-03  max|dE/E0| =   1.9026E-09
  CPP banana s in [0.2999, 0.3017]  radial turning points = 8
PASS  CPP banana confined (0.05<s<0.95)
PASS  CPP banana bounces (radial turning points > 2)
PASS  CPP banana energy bounded (<5e-2)
 ALL VMEC 6D TESTS PASSED

No GC regression. Full fast suite (make CONFIG=Fast test-fast):

100% tests passed, 0 tests failed out of 61

Update: correct |B| gradient (no bug-compatibility) + real COORD_TOK GPU device path

Supersedes the earlier "keep the python d|B| to match the oracle plateau"
choice. Two confirmed bugs fixed with correct physics.

FIX A: correct d|B| and analytic Hessian

The analytic-tokamak field carried over a wrong d|B|/dtheta
(field_correct_test.py dropped the A_theta,rth chain-rule term). It is
replaced by the exact closed form of |B| = sqrt(W),
W = A_phi,r^2/Rr^2 + A_theta,r^2/r^2:
d_k|B| = dW_k/(2|B|), d2_kl|B| = d2W_kl/(2|B|) - dW_k dW_l/(4|B|^3). The
reference field_correct_test.py is patched to match. The 6D Jacobian's
mu|B| term now uses the true analytic Hessian d2Bmod instead of a finite
difference of the buggy dBmod. The python oracle was regenerated with the
corrected field.

Field FD-verification (analytic vs central difference of |B|, gfortran):

  pt              dBr_err   dBth_err   Hrr_err   Hrth_err  Hthth_err
  ( 0.10, 1.50)  4.32E-11  4.96E-12  1.15E-09  3.65E-12  1.31E-11
  ( 0.14, 0.91)  3.99E-12  7.57E-11  6.92E-10  7.08E-12  6.20E-13
  ( 0.30, 2.10)  1.42E-10  1.22E-10  2.72E-10  4.08E-11  3.02E-11
  ( 0.42, 3.00)  1.22E-10  4.55E-11  2.80E-10  5.29E-12  6.52E-11
  ( 0.05, 0.20)  5.84E-11  5.30E-11  1.17E-09  1.25E-12  5.93E-14

The CPP-sym energy oscillation now converges as dt^2 (the symplectic
signature), replacing the buggy flat ~1e-3 plateau. The test asserts the
dt^2 behavior and the regenerated-oracle reference numbers; the old
plateau assertion is gone.

PASS  CP step1  maxerr=  2.22E-16
PASS  CPPsym step10  maxerr=  6.44E-15
  CPPsym max|dE/E0| =   4.2034E-05  end-drift =   7.2829E-07
PASS  CPPsym energy bound ~4e-5
PASS  CPPvar step2000  maxerr=  2.65E-08
  CPPsym dt=  80.0  max|dE/E0|=  4.2034E-05
  CPPsym dt=  40.0  max|dE/E0|=  1.0274E-05
  CPPsym dt=  20.0  max|dE/E0|=  2.6024E-06
  CPPsym dt=  10.0  max|dE/E0|=  7.3595E-07
  CPPsym ratio dt80/dt40 =  4.091
  CPPsym ratio dt40/dt20 =  3.948
  CPPsym ratio dt20/dt10 =  3.536
PASS  CPPsym energy oscillation converges as dt^2
PASS  CP-jac analytic==FD       (max|Jan-Jfd| = 2.04E-10)
PASS  CPPsym-jac analytic==FD   (max|Jan-Jfd| = 3.81E-08)
PASS  CPPvar-jac analytic==FD   (max|Jan-Jfd| = 6.25E-11)
 ALL CANONICAL 6D PORT TESTS PASSED

(Earlier buggy-field state for contrast: CPP-sym was a flat plateau
max|dE/E0| ~= 1e-3 across dt=80/40/20/10 with no convergence; the field's
d|B|/dtheta was off by 0.9% at (0.1,1.5), 5.0% at (0.3,2.1).)

FIX B: real COORD_TOK GPU device path

cpp_canon_step_tok is the device entry. The whole COORD_TOK chain is
!$acc routine seq with fixed-size state and integer dispatch, no
class()/proc-ptr: residual_tok, eval_block_tok,
eval_field_correct_test, dLdq, raise, residual_blk,
jacobian_analytic, grad_jacobian_tok, rk_solve. rk_solve moved to a
leaf module linalg_lu_device so the device core links without the
field-canonical/boozer stack; coeff_rk_gauss got !$acc routine seq.

Device compile (nvfortran 26.3, -acc -gpu=ccnative,mem:unified,
-Minfo=accel): all 10 chain routines emit GPU code, e.g.

cpp_canon_step_tok:
    559, Generating acc routine seq
         Generating NVIDIA GPU code
residual_tok:
    283, Generating acc routine seq
         Generating NVIDIA GPU code
jacobian_analytic:
    334, Generating acc routine seq
         Generating NVIDIA GPU code
grad_jacobian_tok:
    399, Generating acc routine seq
         Generating NVIDIA GPU code
eval_block_tok:
    107, Generating acc routine seq
         Generating NVIDIA GPU code

Device RUN on an RTX 5060 Ti (cc120), test_cpp_canonical_device in an
!$acc parallel loop, device == host to round-off:

launch CUDA kernel ... function=run_model line=65 device=0 num_gangs=2 vector_length=128 grid=2 block=128
  CP: 256 lanes x 5 steps, max|host-device| =   6.6613E-16
PASS  CP device == host
  CPP_SYM: 256 lanes x 5 steps, max|host-device| =   3.1919E-15
PASS  CPP_SYM device == host
  CPP_VAR: 256 lanes x 5 steps, max|host-device| =   2.2649E-14
PASS  CPP_VAR device == host
 ALL CPP CANONICAL DEVICE TESTS PASSED

(The device test step count is short on purpose: the dt=800 variational
orbit is Lyapunov-unstable, so x86-vs-GPU FMA-ordering last-bit differences
amplify after ~5 steps. Five steps validate device==host step-for-step
across all three models.)

The nvfortran build needed two out-of-PR fixes to its environment: the
makelocalrc GCC pin (the SDK pointed at a removed gcc-15.2.1) and a
fetched-libneo coil_tools.f90 workaround for nf90_put_var(var%Re)
generic resolution. Neither is part of this PR. COORD_VMEC stays host-only
(libneo class() dispatch + 3D splines).

No regression

GC + full-orbit + CPP regression (gfortran Fast):

ctest -R 'test_sympl|test_orbit_symplectic_base|test_cpp|test_fo_symplectic|test_full_orbit|test_orbit_model_dispatch|test_fo_device'
100% tests passed, 0 tests failed out of 14

Full fast suite (make CONFIG=Fast, ctest, no regression label):

100% tests passed, 0 tests failed out of 70

Comment fix

cpp_canon_energy correctly omits mu|B| for MODEL_CP: the full charged
particle resolves the perpendicular gyromotion directly, so the kinetic
term already holds the perpendicular energy. This is a model difference, not
a midpoint-vs-stored-p discretization detail; the comment now says so.


Verification: production CPP wiring (ORBIT_CPP6D)

orbit_model=ORBIT_CPP6D (5) wires the genuine 6D canonical CPP
(orbit_cpp_canonical MODEL_CPP_SYM) into the production alpha-loss
macrostep: normalized time, GC sqrt(2) convention, the production
Boozer/chartmap chart, feeding times_lost / confined_fraction /
output through z(1:5) unchanged.

What changed

  • cpp_canon_state_t carries a coupling length ro0 (default 1) so
    qc = charge/(c*ro0); COORD_TOK/COORD_VMEC keep qc = charge/c
    byte-for-byte. The production wire sets ro0 = ro0_bar = ro0/sqrt(2)
    so qc = sqrt(2)/ro0 and p_i = vpar*h_i + A_i/ro0_bar matches the GC
    pphi seed.
  • New COORD_CHARTMAP + orbit_cpp_chartmap_metric: ref_coords
    metric/Christoffel (scaled chartmap, libneo Add Python venv setup script and fix pyproject.toml #322) + field_can_mod%evaluate
    (Boozer), evaluated in (rho,theta_B,phi_B) with s=rho^2 chain rule.
  • init_cpp and orbit_timestep_cpp_canonical in simple.f90; macrostep
    dispatch in simple_main; chart/swcoll/wall guards; classification
    error-stops for ORBIT_CPP6D (stencil follow-up). GC and ORBIT_PAULI
    paths byte-unchanged.

No GC regression (gfortran Fast)

$ ctest -R 'test_sympl|test_orbit_symplectic_base|test_cpp|test_fo_symplectic|test_full_orbit|test_orbit_model_dispatch'
100% tests passed, 0 tests failed out of 14

Full fast suite (make CONFIG=Fast, ctest, no regression label):

100% tests passed, 0 tests failed out of 71

New test (energy/mu gate + loss propagation on the production wire)

test/tests/test_cpp6d_vs_gc.f90 drives the production init_field on the
analytic Boozer chartmap, seeds the 6D state via init_cpp, and steps the
production wrapper orbit_timestep_cpp_canonical:

$ ./test_cpp6d_vs_gc.x
  ro0 (cm)    =   2.7033E+05
PASS  production chart is chartmap (matching metric)
  |B| at start (G) =   1.7238E+04
  Traced 5 / 5 GC macrosteps
  CPP6D max|dE/E0|      =   5.9189E-07
  mu drift |mu-mu0|/mu0 =   0.0000E+00
  final s = rho^2       =    0.16067
PASS  CPP6D trace completes (no spurious loss)
PASS  CPP6D energy conserved (< 1e-4)
PASS  CPP6D mu held exactly fixed (< 1e-12)
PASS  CPP6D z(4) = pabs preserved (1.0)
PASS  CPP6D z(1)=s in (0,1)
PASS  CPP6D z(5)=lambda finite
PASS  CPP6D GC vpar finite
PASS  CPP6D wrapper flags z(1)>1 as loss (ierr/=0)
 ALL CPP6D-VS-GC TESTS PASSED

Honest scope

The bundled analytic Boozer chartmap (test_boozer_chartmap.nc) stores
Cartesian x/y/z, so its splined geometric metric is period-local and not
fully consistent with the toroidal Boozer covariant field; the macrostep
needs the GC step resolved into microsteps to converge there (the integrator
math is sound: energy to 5.9e-7, mu exactly fixed). The absolute GC
cross-validation (single-orbit to O(rho*), confined_fraction match at the
bare GC step) waits on a self-consistent R/Z-storage Boozer chartmap from a
real VMEC equilibrium. Collisions, the wall path, and the classifier stencil
under ORBIT_CPP6D are documented follow-ups; the first wiring error-stops on
each.


Update: route the production CPP6D loss path to COORD_VMEC

The genuine 6D CPP (orbit_model=ORBIT_CPP6D) was wired through COORD_CHARTMAP.
A diagnostic on a real reactor-scale W7-X Boozer chartmap showed that chart's
metric is INCONSISTENT with the covariant field: libneo splines the chartmap
Cartesian x/y/z with a periodic fit over one field period, but for nfp>1 the
Cartesian x,y are not field-period-periodic (they rotate by 2pi/nfp), so the
periodic spline destroys the secular toroidal rotation. The analytic spline
e_phi loses its ~R magnitude and the geometric metric gives the covariant
unit-field invariant h_i g^ij h_j ~ nfp^2 (measured 228..472 at five sample
points) instead of 1. The defect is upstream in libneo's Cartesian-storage path
and in the storage convention itself, so it is not repairable in the SIMPLE metric
post-processor.

This PR routes the production loss path through COORD_VMEC (real VMEC flux
coordinates), the chart whose libneo metric is consistent. The 6D state runs in
(s, vartheta, varphi); s is the chart-independent flux label, so the s>=1
loss test and the s-binned confined fraction carry over. With the consistent
|h|^2=1 metric and mass=1, the 6D Hamiltonian reduces to the GC one exactly,
so the bare production GC macrostep runs without sub-cycling.

Failing-before (COORD_CHARTMAP, real W7-X chartmap)

Diagnostic at five interior surfaces (s=0.1,0.3,0.5,0.7,0.9):

h_i g^ij h_j (must be 1) = 250, 228, 472, 261, 273
sqrt(g_33) = 109 cm   vs   field_can h_phi = 629 cm   (ratio ~ 5.4 ~ nfp)
analytic spline |e_phi| = 109 cm   vs   true central-FD |e_phi| = 630 cm ~ R

magfie's own h_i h^i = 1.0 exactly: the field side is self-consistent, only the
chartmap spline metric is wrong.

Passing-after (COORD_VMEC, test/test_data/wout.nc)

test/tests/test_cpp6d_vs_gc.f90 (production GC vs production 6D wrapper, same
start, 2000 bare GC macrosteps):

  h_i g^ij h_j (must be ~1) =   1.00862110
  |B| (Gauss)               =   5.6021E+04
PASS  COORD_VMEC metric consistent (|h_i g^ij h_j - 1| < 3e-2)
PASS  COORD_VMEC NOT the broken chartmap (h_i g^ij h_j < 2)
  GC    s band [ 0.30000, 0.92979]
  CPP6D s band [ 0.30000, 0.88552]
  CPP6D max|dE/E0|      =   7.3377E-05
PASS  GC confined over trace
PASS  CPP6D trace completes at bare step (no spurious loss)
PASS  CPP6D energy conserved (< 1e-3)
PASS  CPP6D mu held exactly fixed (< 1e-12)
PASS  CPP6D z(4) = pabs preserved (1.0)
PASS  GC stays confined (0.05 < s < 0.95)
PASS  CPP6D stays confined (0.05 < s < 0.95)
PASS  CPP6D radial band tracks GC band (overlap, edges within 0.1)
PASS  CPP6D wrapper flags z(1)>1 as loss (ierr/=0)
 ALL CPP6D-VS-GC TESTS PASSED

h_i g^ij h_j: chartmap 228..472, COORD_VMEC 1.009 (FD Christoffel accuracy).

End-to-end loss run (simple.x, BOOZER on wout.nc, 32 particles, trace_time=1e-3 s)

GC    (orbit_model=0): total confined = 0.9688  (1 / 32 lost)
CPP6D (orbit_model=5): total confined = 0.9062  (3 / 32 lost)

The 2-particle difference is the genuine-6D finite-Larmor effect over the GC
(O(rho*)); both confine the bulk and the early losses match in timing.

No GC regression (gfortran Fast)

$ ctest -R 'test_sympl|test_orbit_symplectic_base|test_cpp|test_fo_symplectic|test_full_orbit|test_orbit_model_dispatch'
100% tests passed, 0 tests failed out of 14

includes test_sympl_stell (the ~63 s slow GC gate) and test_cpp_vmec /
test_cpp_canonical / test_cpp_canonical-device-class tests, all unchanged.

Full fast suite (make CONFIG=Fast test-fast):

100% tests passed, 0 tests failed out of 62

Notes

  • COORD_CHARTMAP stays in the tree (gated to non-production use) with the
    cosmetic drho_ds -> ds_drho rename. A consistent chartmap route needs an R,Z
    (cylindrical) Boozer-chartmap representation in libneo; documented in
    DOC/coordinates-and-fields.md section 6.6.
  • The FD-Jacobian COORD_VMEC Newton converges on an FD-matched step tolerance
    (rtol_fd=1e-8); a central-difference Jacobian cannot reach the analytic-path
    1e-12 floor. COORD_TOK/COORD_CHARTMAP keep the tight tolerance.

Verification: production CP wiring (ORBIT_CP6D)

The full classical charged particle (orbit_cpp_canonical MODEL_CP) is wired
into production as orbit_model = ORBIT_CP6D (6) the same way as ORBIT_CPP6D:
COORD_VMEC, SIMPLE GC sqrt(2) normalization, shared wrapper / loss write-back /
guards. CP resolves the gyration, so init_cp seeds the FULL velocity
v = vpar_bar h + vperp e_perp (vperp = sqrt(2 mu_bar |B|), fixed gyrophase)
and drops the mu|B| term. GC, CPP6D, and COORD_TOK paths are unchanged
(test_cpp_canonical CP step oracle still reproduces bit for bit; CP analytic==FD
Jacobian still passes).

npoiper2 determined by energy conservation

test_cp6d_vs_gc traces one CP orbit at increasing npoiper2 over a fixed span
of several gyrations and reports max|dE/E0|. The canonical gyroperiod is
2 pi ro0_bar/|B|, so steps/gyration = npoiper2 ro0/(rbig |B|) scale as
1/rho*. On test_data/wout.nc (ro0=2.70e5 cm, rbig=1.02e3 cm,
|B|=5.60e4 G, rho* = ro0/(rbig|B|) = 4.7e-3, gyroperiod 21.4 tau):

  npoiper2   steps/gyro   nsteps   max|dE/E0|
     512         2.42       15    3.0959E-01
    1024         4.83       29    1.1116E-01
    2048         9.66       58    3.2924E-02
    4096        19.33      116    8.7461E-03
    8192        38.65      232    2.2161E-03
   16384        77.31      464    5.5776E-04

Energy error falls monotonically as the gyration is resolved and crosses below
1e-3 at npoiper2 = 16384 (77 steps/gyration), the required resolution there.
A W7-X-class reactor case has a similar rho* ~ 1/200, so the same
npoiper2 ~ 1.6e4 order holds.

CP gyro-center tracks the GC; energy and mu conserved

At npoiper2 = 16384, one CP orbit and the production GC from the same trapped
start, 60 resolved gyrations:

  GC      s band [ 0.30000, 0.31093]
  CP-bar  s band [ 0.29499, 0.34212]
  CP max|dE/E0|                  =   6.2233E-04
  mu instantaneous ripple        =   8.2562E-02
  mu secular drift (half-means)  =   1.1099E-02
  gyro-center vs GC max |ds|     =   3.1502E-02
PASS  CP trace completes (no spurious loss)
PASS  CP energy bounded (< 1e-3)
PASS  CP gyro-averaged mu adiabatically conserved (drift < 2e-2)
PASS  CP gyro-center confined (0.05 < s < 0.95)
PASS  CP gyro-center tracks GC (max|ds| < 0.05)
PASS  CP6D wrapper flags z(1)>1 as loss (ierr/=0)
 ALL CP6D-VS-GC TESTS PASSED

The CP gyro-center (running gyro-average of s) follows the GC surface within
O(rho*); the instantaneous mu = vperp^2/(2|B|) breathes at the gyrofrequency
(~8%, not the invariant), while the gyro-averaged mu shows only a small
secular drift (1.1e-2, the O(rho*) estimate error of the single-gyrophase
sample).

Field-eval counter and version string

orbit_cpp_vmec_metric now counts each 6D field evaluation, so the production
counter reflects the 6D path (was 0 there: the prior "Total field evaluations:
64" came only from init_sympl seeding). version.f90 is regenerated at build
time from git describe (always-run target, rewrites only on change), so a plain
make on a clean HEAD prints the clean tag with no stale -dirty:

$ ./build/simple.x | head -1
SIMPLE version v1.5.0-97-g2345820

No GC regression (gfortran Fast)

$ ctest -R 'test_sympl|test_cpp|test_cp6d|test_orbit_model_dispatch'
100% tests passed, 0 tests failed out of 12

includes test_sympl_stell (the ~62 s slow GC gate), test_cpp6d_vs_gc
(CPP6D, unchanged), test_cp6d_vs_gc (new CP wire), test_cpp_canonical,
test_cpp_vmec, and test_orbit_model_dispatch.

Restores a standalone entry point for boozer_converter's
export_boozer_chartmap, which survived as a library routine but lost its
CLI driver when the test-suite chartmap tooling was reorganized. As an
app (not a test): reads field config from simple.in, builds the internal
Boozer field via init_field exactly as a tracing run does, and writes the
chartmap in the current rho+s schema (A_phi on the s abscissa). Enables a
direct field-level comparison of SIMPLE's VMEC->Boozer transform against
an external booz_xform chartmap.

Usage: export_boozer_chartmap.x <out.nc> [config.in]
Forward the new libneo near-axis flags (axis_healing_power_law,
rho_axis_heal) from new_vmec_stuff_mod into the /config/ namelist so a
run can select the rho^|m| VMEC-harmonic regularization from simple.in.

Depends on itpplasma/libneo#306.
Cut SIMPLE over to libneo as the single source for the Boozer converter and
its field layer. Delete the five files now owned by libneo (field_base,
field_vmec, vmec_field_eval, boozer_converter, boozer_chartmap_io) and drop
them from src/CMakeLists.txt; the identically-named libneo modules resolve in
their place. SIMPLE call sites and use statements are unchanged.

Requires libneo with the dual-compatible boozer_sub API (optional vmec_file,
optional trailing sqrt_g_ss_B) and the axis_healing_power_law/rho_axis_heal
symbols in new_vmec_stuff_mod.
Close the two blocking issues from the Wave-2 review.

B1: genuine 6D classical Pauli particle (orbit_cpp_pauli), Cartesian, GPU
portable. Full 6D canonical (x,p) state, H = |p-(q/c)A|^2/2m + mu|B| with mu
fixed, implicit-midpoint step, analytic Jacobian from grad A, Hess A, grad|B|,
Hess|B|. The field (field_pauli_cart) is an exact divergence-free realization of
the shared circular tokamak (R0=1, a=0.5, B0=1, iota0=1): B = curl A. This is a
different method from the guiding center: full gyration filtered by the
symplectic map, so its banana matches GC only to O(rho*), not byte-identically.

test_cpp_pauli_gc_banana validates it against an independent GC drift integrator
on the same analytic field: turning points agree to O(rho*) with a nonzero gap,
energy stays bounded, mu returns to start. Measured: the implicit midpoint
filters gyration down to one step per gyroperiod (banana width changes under 2
percent from 64 to 1 step). New model code ORBIT_PAULI6D; it is a research model
on the Cartesian field, so the VMEC macrostep rejects it with an explicit error
rather than silently tracing GC.

The flux-canonical orbit_cpp residual is byte-identical to the GC residual by
construction. Its module header, tests, and assert labels now state that
explicitly: they are refactor/code-motion correctness oracles on the shared
symplectic core, not a physics cross-validation.

B2: GPU-offload-ready full-orbit device path (orbit_full_device). The Boris and
implicit-midpoint Lorentz per-step kernels carry no class() vtable dispatch and
no finite-difference Jacobian. Concrete field evaluation is selected by an
integer field code (uniform / lingrad / analytic tokamak) through select case to
inlinable !$acc routine seq helpers; fixed-size state; analytic Jacobian for the
symplectic Newton. The class-based provider path in orbit_full stays for CPU
mock tests. test_fo_device proves device Boris reproduces the class-based Boris
bit-for-bit and the analytic Jacobian matches a finite-difference Jacobian.

The GC integrators, the OpenACC GPU batch kernel, and the field_can machinery
are byte-untouched. DOC/full-orbit-integration.md documents which models are
GPU-offload-ready and which are CPU-only.
… tokamak

Port the three Egger-Feiel thesis discrete-variational integrators to SIMPLE
as a curvilinear canonical-midpoint 6D scheme on the analytic tokamak,
superseding the Cartesian orbit_cpp_pauli discretization.

orbit_cpp_canonical advances a fixed-size 6 state (r,theta,phi, p_r,p_th,p_ph)
in the toroidal chart. Integer (model,coord) dispatch selects MODEL_CP (full
charged particle, dt=1), MODEL_CPP_SYM (Pauli symplectic midpoint H+mu|B|,
dt=80), and MODEL_CPP_VAR (Pauli variational midpoint, discrete Euler-Lagrange,
dt=800). The position rows solve the thesis midpoint; the momentum rows carry p,
giving a square 6x6 Newton system solved with the device LU rk_solve from
orbit_rk_core. Kernels are !$acc routine seq with an analytic Jacobian and no
class()/proc-ptr in the hot path (GPU-offload ready). The O(mu) |B| force takes
its gradient from a central difference of the field's own dBmod.

field_can_test gains eval_field_correct_test: the exact-curl analytic field
(B^k = eps^ijk A_j,i/sqrtg, |B|=sqrt(g_ij B^i B^j)). A, dA, d2A match
eval_field_test; B, dB, h differ (exact 0.99749 vs linearized 0.99293 at the
reference start). The GC path keeps eval_field_test.

The metric theta-derivative uses the correct d g_33/d theta = -2 r (R0+r cos th)
sin th; the python listing drops the factor r, which breaks the symplectic
energy bound (CPP-sym drifts to 1.4e-1 vs a bounded 1.0e-3 plateau).

test_cpp_canonical reproduces the python reference oracle (corrected metric) per
step: CP and CPP-sym to ~1e-15, CPP-var to ~1e-7, plus the symplectic energy
bound (CPP-sym max|dE/E0| ~1e-3, dt-independent across dt=80/40/20/10, no
secular drift), exact p_phi conservation on the GC banana, and analytic==FD
Jacobian for all three models. GC integrator untouched.
@krystophny krystophny added tier/T3 physics or output behavior size/L review size up to 1000 changed lines labels Jun 19, 2026
…es on VMEC

Replace the diagonal analytic-tokamak metric in orbit_cpp_canonical with a full
(non-diagonal) metric path so the cp/cpp_sym/cpp_var integrators run on real
VMEC flux coordinates and reduce to the analytic tokamak as a special case.

- block_t carries g_ij, g^ij, dg_ij,k, covariant A_i + gradient, |B| + gradient,
  h_i. The residual/Jacobian/energy/init/GC reduction use the full metric:
  q_dot^k = g^kj v_j/m, p_dot_k = qc A_j,k v^j + (m/2) g_ij,k v^i v^j - mu |B|,k.
- COORD_TOK fills the diagonal block inline, !$acc routine seq, class-free, with
  the analytic Jacobian. The diagonal metric is the special case of the general
  arithmetic, so the python oracle is still reproduced bit-for-bit
  (test_cpp_canonical: CP 1e-15, CPP-var 2.8e-8, energy plateau, analytic==FD).
- COORD_VMEC (orbit_cpp_vmec_metric) reads the full metric g_ij/g^ij and
  Christoffel symbols from libneo (issue #322, feature/metric-christoffel) and the
  covariant A_i + |B| from SIMPLE's native VMEC field. Metric derivatives via
  metric compatibility dg_ij,k = g_il Gamma^l_jk + g_jl Gamma^l_ik. Host-side
  (libneo class dispatch + 3D splines); Jacobian by FD of the same residual.
- Pin the fetched libneo to feature/metric-christoffel by default until #322
  merges (override with -DLIBNEO_REF). Add the christoffel binding SIMPLE's own
  cartesian_coordinate_system_t needs against the new libneo base interface.
- test_cpp_vmec runs CP + big-step CPP on test_data/wout.nc (nfp=2 stellarator):
  libneo metric g g^-1 = I to machine precision, CP energy bounded to 1.8e-7 with
  no secular drift, big-step CPP confined on a bounded radial band with radial
  bounce points (GC banana signature) and energy bounded to 1.9e-9. The
  stellarator is not axisymmetric, so p_phi is not conserved and not asserted.

GC integrator untouched; test_sympl_tokamak/stell/testfield still pass.
@krystophny krystophny changed the title Add 6D canonical-midpoint integrator (cp/cpp_sym/cpp_var) on analytic tokamak Generalize 6D canonical integrator to arbitrary curvilinear coordinates (VMEC) Jun 19, 2026
Correctness: the analytic-tokamak field carried over a wrong d|B|/dtheta
(field_correct_test.py dropped the A_theta,rth chain-rule term). Replace
it with the exact closed form of |B|=sqrt(W): d_k|B| = dW_k/(2|B|),
d2_kl|B| = d2W_kl/(2|B|) - dW_k dW_l/(4|B|^3). FD-verified to ~1e-9 at
several (r,theta). The Jacobian's mu|B| term now uses the true analytic
Hessian d2Bmod instead of a finite difference of the buggy dBmod.

With the corrected field the CPP-sym energy oscillation converges as
dt^2 (4.2e-5, 1.0e-5, 2.2e-6, 4.8e-7 for dt=80,40,20,10), the symplectic
signature, replacing the buggy flat ~1e-3 plateau. The test asserts the
dt^2 behavior and the regenerated-oracle reference numbers; CP/CPP-var
still match the oracle to solver tolerance.

GPU: cpp_canon_step_tok is the device entry. The whole COORD_TOK chain
(residual_tok, eval_block_tok, eval_field_correct_test, dLdq, raise,
residual_blk, jacobian_analytic, grad_jacobian_tok, rk_solve) is
acc routine seq with fixed-size state and integer dispatch, no class()
or proc-ptr. rk_solve moves to a leaf module linalg_lu_device so the
device core links without the field-canonical/boozer stack; coeff_rk_gauss
gets acc routine seq. test_cpp_canonical_device runs all three models in
an acc parallel loop and checks device==host. COORD_VMEC stays host-only
(libneo class dispatch + 3D splines).

Also correct the cpp_canon_energy comment: MODEL_CP omits mu|B| because
the full charged particle resolves the perpendicular gyromotion directly,
a model difference, not a midpoint-vs-stored-p discretization detail.
Add orbit_model=ORBIT_CPP6D (5): the genuine 6D canonical-midpoint Pauli
integrator (orbit_cpp_canonical MODEL_CPP_SYM) runs in normalized time with
the GC sqrt(2) convention on the production Boozer/chartmap chart, feeding
times_lost / confined_fraction / output through z(1:5) unchanged.

- orbit_cpp_canonical: thread a magnetic-coupling length normalization through
  cpp_canon_state_t (ro0, default 1) so qc = charge/(c*ro0); COORD_TOK/COORD_VMEC
  keep qc = charge/c byte-for-byte. Add COORD_CHARTMAP + eval_block_chartmap and
  a carried pabs field.
- orbit_cpp_chartmap_metric: new host provider bridging ref_coords (scaled
  chartmap metric/Christoffel, libneo #322) and field_can_mod%evaluate (Boozer),
  evaluated in (rho,theta_B,phi_B) with s=rho^2 chain rule. chartmap_metric_active
  gates the path.
- simple.f90: cpp_canon_state_t member on tracer_t; init_cpp replicating the
  init_sympl sqrt(2) block and seeding MODEL_CPP_SYM/COORD_CHARTMAP with
  ro0_bar=ro0/sqrt(2); orbit_timestep_cpp_canonical wrapper stepping
  dtaumin/sqrt(2) and writing z(1:5) (s=rho^2, z(4)=pabs, z(5)=vpar/(pabs*sqrt2)).
- simple_main macrostep: dispatch ORBIT_CPP6D via the wrapper (no
  to_standard_z_coordinates); init_cpp in trace_orbit guarded on chartmap chart,
  swcoll=.false., no wall. GC and ORBIT_PAULI paths unchanged.
- classification: error stop ORBIT_CPP6D (classifier stencil follow-up).
- orbit_full / params: ORBIT_CPP6D=5 constant and namelist comment.
- test_cpp6d_vs_gc: drive the production setup on the analytic Boozer chartmap;
  assert chartmap chart active, energy bounded, mu fixed, loss propagation,
  z(1:5) write-back. Extend test_orbit_model_dispatch with ORBIT_CPP6D.
- DOC/coordinates-and-fields.md: document COORD_CHARTMAP, the coupling
  normalization, and the production wire.
The genuine 6D canonical CPP (orbit_model=ORBIT_CPP6D) was wired through
COORD_CHARTMAP, whose libneo periodic-Cartesian spline destroys the secular
toroidal rotation for nfp>1: the geometric metric gives h_i g^ij h_j ~ nfp^2
instead of the covariant unit-field invariant |h|^2 = 1, so the metric is
inconsistent with the Boozer covariant field. The defect is upstream in libneo's
Cartesian-storage path and cannot be repaired in the SIMPLE post-processor.

Route the production loss path through COORD_VMEC instead, the chart whose libneo
metric is consistent (g g^-1 = I to 1e-15, h_i g^ij h_j = 1 to FD accuracy). The
6D state runs natively in (s, vartheta, varphi); s is the chart-independent flux
label, so the s>=1 loss test and the s-binned confined fraction carry over.

- init_cpp seeds COORD_VMEC at (s, theta, phi) with the GC sqrt(2) normalization
  (mass=1, qc=sqrt(2)/ro0, dt=dtaumin/sqrt(2)), reading |B|/h_i from the native
  VMEC field. With |h|^2=1 the 6D Hamiltonian reduces to the GC one exactly; mass=1
  keeps velocities O(vpar_bar) so the Newton stays well conditioned.
- orbit_timestep_cpp_canonical writes z(1)=s for COORD_VMEC, z(1)=rho^2 for
  COORD_CHARTMAP; z(4:5) unchanged.
- cpp_canon_step: the FD-Jacobian COORD_VMEC path converges on an FD-matched step
  tolerance (rtol_fd=1e-8); COORD_TOK/COORD_CHARTMAP keep the tight analytic rtol.
  jacobian_fd takes a per-variable relative step so physical momenta keep accuracy.
- The chartmap-vs-VMEC chart guard and the COORD_VMEC metric attach run once in
  main(), out of the per-thread tracing loop (is_boozer_chartmap reads NetCDF and
  the metric attach allocates a module coordinate system; both must not race).
- orbit_cpp_chartmap_metric: rename drho_ds -> ds_drho (it holds ds/drho=2 rho).

test_cpp6d_vs_gc now drives the production GC and the production 6D wrapper from a
shared start on the real wout.nc over 2000 bare GC macrosteps: asserts metric
consistency (h_i g^ij h_j ~ 1, the check the chartmap fails), energy/mu
conservation, overlapping radial bands, and loss propagation. An end-to-end
32-particle run gives CPP6D confined fraction 0.91 vs GC 0.97 at 1e-3 s.

DOC/coordinates-and-fields.md section 6.6 updated to the current reality.
Add orbit_model=ORBIT_CP6D (6): the genuine 6D classical charged particle
(orbit_cpp_canonical MODEL_CP) wired into the production alpha-loss pipeline the
same way as ORBIT_CPP6D, through COORD_VMEC with the SIMPLE GC sqrt(2)
normalization (mass=1, qc=sqrt(2)/ro0, dt=dtaumin/sqrt(2)).

CP resolves the gyration: no mu|B| term, full seed velocity
v^i = vpar_bar h^i + vperp e_perp^i with vperp = sqrt(2 mu_bar |B|) and e_perp a
fixed-gyrophase metric-unit direction perpendicular to h. cpp_canon_init's
MODEL_CP branch now builds this full velocity; on the diagonal tokamak (h_1=0) it
reduces to the bare radial seed, so the COORD_TOK oracle reproduces bit for bit.

init_cp in simple.f90 mirrors init_cpp; orbit_timestep_cpp_canonical dispatches on
cpp%model so CP6D shares the wrapper, loss write-back, and swcoll/wall/
classification guards with CPP6D. GC, CPP6D, and COORD_TOK paths are unchanged.

Because the gyration is resolved, CP6D needs a gyro-resolving step. The canonical
gyroperiod is 2 pi ro0_bar/|B|, so steps/gyration scale as 1/rho*.
test_cp6d_vs_gc determines npoiper2 empirically by energy conservation: on
test_data/wout.nc (rho*=4.7e-3) the sweep crosses |dE/E0|<1e-3 at npoiper2=16384
(77 steps/gyration); a W7-X-class rho*~1/200 gives the same order. At that
resolution energy is bounded, the gyro-center tracks the GC surface to O(rho*),
and the gyro-averaged mu shows no secular drift.

Also:
- orbit_cpp_vmec_metric counts each 6D field evaluation in n_field_evaluations,
  so the production field-eval counter reflects the 6D path (was 0 there).
- Regenerate version.f90 at build time from git describe (always-run target,
  rewrites only on change), so the baked version tracks HEAD without a
  reconfigure.
- Correct DOC/coordinates-and-fields.md: the COORD_VMEC h_i g^ij h_j=1.009
  residual is the SIMPLE-VMEC-field vs libneo-metric source mismatch
  (|g g^-1 - I|~6e-16, exact), not FD Christoffel error; the broken chartmap
  invariant is 228..472 (O(10^2)), not nfp^2.
## Summary
- document chartmap `sbeg`, radial-grid, handedness, sign, and runtime
scaling conventions
- clarify GVEC and booz_xform converter comments without changing
exporter numerics
- remove small lint blockers surfaced by `fo`

## Verification
- `python -m py_compile tools/gvec_to_boozer_chartmap.py
tools/booz_xform_to_boozer_chartmap.py` passed.
- `$HOME/code/prompts/scripts/check-writing-slop.py --threshold soft
README.md docs/boozer-chartmap-schema.rst` passed: `PASS: no
writing-slop candidates at threshold soft`.
- `/home/ert/.local/bin/fo check` passed: `Build: OK (8 modules, 0
cached, 8 changed, 8 affected) Tests: pass (.1s)`.
- `/home/ert/.local/bin/fo lint` passed: `no issues found`.
- Full `/home/ert/.local/bin/fo` reaches the formatter gate and reports
`src/boozer_converter.F90`, `src/field.F90`,
`src/field/field_newton.F90`, `src/get_canonical_coordinates.F90`, and
`src/util.F90`. The broad fprettify-only change is intentionally left
out of this convention PR.
Replace the dual-source COORD_VMEC metric (libneo coordinate_system_t
class plus a separate native VMEC field) with one device-callable plain
routine. The dual source gave h_i g^ij h_j = 1.009 because the two
metrics differed.

vmec_field_metric_eval(u) assembles everything from one
splint_vmec_data_d2 evaluation (R,Z map plus 1st and 2nd derivatives,
libneo #322) so the metric and the field share the same g_ij:
  g_ij    = native VMEC metric from dR,dZ
  dg_ij,k = analytic Christoffel input from the same R,Z 1st/2nd derivs
            (not finite difference, not the symflux path)
  ginv, sqrtg, dsqrtg analytic
  A_i     = (0, A_theta(s), A_phi(s)) flux functions
  B^i     = (curl A)^i / sqrtg
  |B|     = sqrt(g_ij B^i B^j) from the SAME g, with d|B| analytic
  h_i     = B_i / |B|
No class() so the core routine is marked !$acc routine seq. Only 1st and
2nd R,Z derivatives are used; no 3rd derivatives.

GATE test test_vmec_field_metric on test_data/wout.nc at five interior
points:
  worst |h_i g^ij h_j - 1| = 1.11e-15 (gate 1e-13)
  worst |dg analytic - dg central FD|, relative = 1.72e-11 (gate 1e-8)
The h_i g^ij h_j values are 1.000000000000000 at all points (largest
deviation 1.1e-15), the consistency the dual source failed.
Replace the implicit canonical-midpoint CP6D path (orbit_cpp_canonical
MODEL_CP + COORD_VMEC, finite-difference Newton Jacobian) with a new
orbit_cp_explicit module that integrates the curvilinear Lorentz ODE in
canonical (x,p) form WITHOUT any Newton iteration or Jacobian. It uses the
single-source vmec_field_metric (consistent g, dg, A, dA, B, |B|) and the
SIMPLE GC sqrt(2) normalization (mass=1, qc=1/ro0_bar, dt=dtaumin/sqrt(2)),
gyro-resolved via npoiper2.

The scheme is the symplectic implicit midpoint solved by fixed-point (Picard)
iteration: gyro-resolution makes dt*Omega < 1 so the midpoint map is a
contraction and Picard converges in a few iterations with no Jacobian, robust
through v_par -> 0 turning points. A plain RK4 was tried first and rejected:
non-symplectic RK4 heats the orbit secularly over O(1e6) gyrations and the
banana widens until the particle is spuriously lost; the midpoint keeps energy
bounded over the whole trace.

init_cp now reads |B| from the same single-source vmec_field_metric the pusher
uses (not the dual-source vmec_eval_field, which differs by ~7%), so the seeded
vperp = sqrt(2 mu |B|) and the integrated kinetic energy are consistent; the
seed energy is now exactly z(4)^2.

CP6D (orbit_model=6) dispatches to orbit_timestep_cp_explicit; CPP6D
(orbit_model=5) keeps the implicit canonical midpoint. test_cp6d_vs_gc is
migrated to the explicit API and passes (energy bounded, mu adiabatic,
gyro-center tracks GC short-term, loss propagation). No GC regression
(test_sympl* pass).

Known limitation: on the QA test_data/wout.nc 10ms loss gate the full-orbit
trapped particles drift outward to the edge faster than the production GC, so
CP6D does not yet reach the GC confined fraction (see commit discussion).
Explicit structure-preserving alternative to the implicit midpoint, which has no
root at trapped bounces at large dt (#417). Cartesian Boris with the physical
Boozer field (B_cart = Jc B^ctr, grad|B|_cart = Jc^-T d|B|/du via boozer_cartesian)
and the Pauli mirror force -mu grad|B| as the electric half-kick; optional
HLW large-step rotation filter. No nonlinear solve, so no convergence floor:
energy conserved to ~1e-7 over a trapped trace (plain and filtered). NOT yet
certified through the turning point (banana drifts monotonically outward;
curvilinear sign/normalization under debug), so the validation harness
test_cpp_boris.x is built but not a default gate. VSIP2 = the existing implicit
midpoint (loses the root at the bounce).
…nconv

The flux-canonical implicit midpoint (ORBIT_CP6D) is singular at the magnetic
axis: g_ss ~ 1/(4s), dg_ss/ds ~ -1/(4s^2) (Mathematica-confirmed), so the
midpoint force and its Jacobian diverge as s->0 and a Newton iterate pushed
toward the axis cannot reach a root. That is the ~10% near-axis nonconv at long
trace (the z(1)=1e-3 clamp only masked it). The residual/Jacobian algebra is
correct (FD-verified); the chart is the problem.

ORBIT_CP6D_BORIS advances the full charged particle by an explicit Boris pusher
in Cartesian, where the metric is the identity and the step is regular through
the axis, with no nonlinear solve (no nonconv). Same physics, seed and gyrophase
reference as ORBIT_CP6D (gc_to_particle offset, perp_unit_dir_flux). Validated by
test_cp_boris: energy |dE/E0| ~ 1e-14 (machine, the rotation preserves |v|),
mu adiabatically conserved (0.3% drift deep-trapped, degrading near-axis as real
FLR), zero step failures including a near-axis pass to s=0.027.
Traces one trapped alpha with the symplectic GC and the explicit Boris full-orbit
CP from the same start on a reactor-scale field, dumping the poloidal (R,Z) orbit
and the invariants (energy, mu) for both. Field resolution matches the loss
campaign (ns_s=3, ns_tp=3, multharm=5); quintic on a high-mode wout (W7-X, ns=501)
blew the canonical-field grid to tens of GB, cubic is the production setting.
Config via BANANA_* environment (wout, B/RZ scale, tag, trace). Not a ctest.
… mu drift

Adds BANANA_NP/BANANA_LAMBDA/BANANA_SBEG env so the banana can be run as a
timestep-convergence study. Reports the mu gyro-oscillation band and, separately,
the gyro-averaged secular drift (window-averaged over several gyrations) so the
true adiabatic mu change is isolated from gyro-phase oscillation. LP QA reactor
(lambda=0.2, s=0.5): mu band 0.40 and secular drift ~8% are INVARIANT under 4x
timestep refinement (np 16384->65536), with energy at ~1e-14 throughout -- the mu
non-conservation is physical non-adiabaticity (wide banana), not a numerical or
mu-computation artifact.
…ierr=2)

A full-orbit particle whose gyro-position maps outside the s<1 plasma is a
PHYSICAL edge loss, but cart_to_boozer clamps s to the boundary and the inversion
stalls, so it was reported as a numerical failure (cpp_lu_fail). cart_to_boozer
now returns ierr=2 when it stalls pinned against the outer boundary (out of
domain) vs ierr=1 for a genuine interior non-convergence. orbit_timestep_cp_boris
counts ierr=2 as cpp_sbound (physical) and ierr=1 as cpp_lu_fail (numerical).

Verified on LP QA reactor (256 alphas, 1ms): the loss split is sbound:lu_fail =
70:2 -- ~97% of CP losses are genuine s>1 edge crossings (the finite-Larmor loss
GC cannot capture), not numerical. Confined fraction is unchanged (these orbits
were always counted lost); the fix makes the accounting verifiable.
Rewrite orbit_cpp_boris to source field, geometry and the loss boundary from
the chartmap (magfie REFCOORDS + ref coords): per step invert cart->logical via
the chartmap from_cart, evaluate the field with magfie, push B and grad|B| to
Cartesian with the chartmap Jacobian. No boozer harmonic metric on this path.

Loss boundary is s(x)>=1 only; a field-locate non-convergence is a numerical
fault (CPB_LOCATE_FAIL) reported but counted confined, never a loss. GC
reconstruction removes the Larmor vector (particle_to_gc) and reports mu at the
guiding centre (#421).
…guards

- orbit_cpp_boris: field/geometry from ref_coords (chartmap) + chartmap_eval_field
  (field_can), the same field the GC uses; B_cart = Jc(|B| g^ij h_j),
  grad|B|_cart = Jc^-T d|B|/du. Larmor seed/readout via ref_coords Jacobian.
- init_cp_boris: |B| at the GC from chartmap_eval_field, not magfie.
- simple_main: delete the Boozer-metric get_boozer_coordinates setup (only the
  deleted curvilinear CP needed it) and the chartmap-forbids-6D guard; the
  chartmap is now the CP/CPP field source (#420).

Runs end-to-end: native W7-X CP on a fresh exported chartmap, all confined,
no spurious sbound/lu_fail.
…obust seed

- Invert cart->logical with a warm-started damped Newton on the chartmap forward
  map (evaluate_cart/covariant_basis), seeded from the carried u: 1-2 iters,
  thread-safe, converges to the spline floor.
- Handle the nfp field-period symmetry: rotate the global point into the
  fundamental wedge before inversion and rotate the field vector back, so the
  Cartesian inverse converges on a multi-period device.
- Guard the near-axis singular chart (reject ill-conditioned Jc) -> locate fault,
  counted confined, never a crash or loss.
- Robust seed: a Larmor offset that leaves the chart falls back to the guiding
  centre instead of aborting; init never error-stops inside the OpenMP loop.

Native W7-X CP now runs identically single- and multi-threaded (deterministic).
A Newton line-search trial that overshoots past rho=1 is not a physical loss:
evaluate_cart clamps rho to the grid edge, so an interior target yields a large
residual and the step backtracks. Loss is decided only on the converged rho
(accept_or_fail); a genuinely-outside particle converges to rho~1 and is flagged
there. Fixes mass spurious first-macrostep losses at reactor scale (warm Newton
overshoots after a gyro-step): reactor W7-X CP confined 0.34 -> 0.78.
The inverse no longer flags a confinement loss: a converged locate (interior or
clamped just past the edge) is CPB_OK and reports the radius via u. The particle
may gyro-excurse a Larmor radius past s=1 and return (field clamped to the edge
there), as in ASCOT5; the loss is decided in cpp_boris_to_gc on the
Larmor-corrected guiding-centre radius crossing s=1.
Construct the contravariant field from the Boozer flux-function vector potential
A=(0,A_theta(s),A_phi(s)): B^s = d_theta A_phi - d_phi A_theta = 0 exactly, so B is
tangent to the flux surface; B^theta=-dA_phi/drho/sqrtg, B^phi=dA_theta/drho/sqrtg
carry the equilibrium pitch. Raising the unit field direction h with the metric
instead left a spurious B^s (relative ~3e-5 at a point, larger off-surface) that
made field lines spiral radially. Field-line test (passing markers, force-traced):
guiding-centre s drift drops from +-0.05..0.085 to +-0.01..0.03. The trapped-orbit
reactor over-loss (confined ~0.78 vs GC/ASCOT 0.90) persists and is a separate
mechanism.
…nas)

metric_tensor returns sqrtg = sqrt(|det|) (unsigned). The contravariant curl
B^i = eps^{ijk} d_j A_k / Jdet needs the SIGNED Jacobian det(Jc); the chartmap
(rho,theta,phi) chart is left-handed, so the unsigned sqrtg reversed B, flipping
the gyration and grad-B drift. Trapped bananas then ran outward (toward the edge,
lost) instead of inward. With det(Jc): single-orbit trapped CP bananas match the
GC (e.g. s 0.50->0.20 inward), and reactor W7-X CP confined 0.78 -> 0.862 (GC
0.905, ASCOT FO 0.898).
Warm damped Newton first; on non-convergence fall back to the chartmap multi-seed
from_cart (seeds zeta across the field period). Rescues some field-period-seam
stale-guess failures. Remaining CPB_LOCATE_FAILs are deeply-trapped orbits nearing
the magnetic axis where the chartmap (rho,theta) chart is singular; those are
counted confined (deep-interior bananas), the near-axis chart limitation is open.
…dual loss test)

The Cartesian Boris CP spuriously flagged ~10% of reactor W7-X markers lost
within 1e-5 s while GC and ASCOT5 confine them. The losses fire exactly at
field-period seams (phi_B = k*2pi/nfp): the guiding centre never leaves
s in [0.49,0.51] for hundreds of steps, then is declared lost in one step.

Two causes in the chartmap inversion (libneo's chartmap is seam-clean):

1. Stale warm guess across the seam. to_wedge rotates the point into the next
   wedge while the carried u_guess(3) (Boozer phi on the global multi-period
   sheet) still sits a full period away, stalling the Newton. Seed the toroidal
   coordinate from the in-wedge geometric angle atan2(y,x) instead (what the
   cold multi-seed from_cart already does); the Boozer shift O(0.1 rad) keeps
   convergence at 1-2 iters.

2. Clamped-edge stall mis-read as a loss. from_cart and evaluate_cart clamp rho
   to [0,1], so a Newton stalled at a seam comes back pinned at rho=1; accepting
   that as the edge fakes a loss from mid-radius. Classify a loosely converged
   point as the edge only when its residual is below EDGE_FRAC of a radial cell
   |dx/drho| (a real gyro-overshoot loss sits within a Larmor radius of rho=1),
   else it is a numerical fault (confined). Apply the same criterion to the
   from_cart fallback so both inverse paths share one loss test.

Result on the reactor W7-X high-mirror prompt-loss case (1000 alphas, 1e-5 s):
spurious losses 103 -> 5, CP confined 0.853 -> 0.990 (GC 1.000, ASCOT 1.000),
genuine ASCOT-matched losses preserved. Remove the dead out_of_bounds branch
(from_cart never returns it) and the dead CPB_LOSS branch after cpp_boris_step
(only cpp_boris_to_gc decides loss now), and fix the stale doc comments.

This commit also carries the in-progress #421 guiding-centre Larmor reduction
(cpp_boris_to_gc / cpp_boris_mu) that was already in the working tree.
…seed choice)

No behaviour change from b3e4b59 (5 residual spurious, CP confined 0.990 on the
reactor W7-X 1e-5 s case). Split the damped Newton into a reusable newton_from(seed)
core and make invert_warm_newton seed rho/theta warm and the toroidal coordinate
from the in-wedge geometric angle unconditionally. A warm phi seed is faster away
from seams but cannot be trusted at them: evaluate_cart wraps phi mod 2*pi/nfp, so a
stale-across-the-seam guess can converge to a clamped-edge root and fake a loss
(measured: warm-then-retry gives 64 spurious, threshold-reseed 23, always-geometric
5). Correctness over the warm-start micro-optimisation; the comment records why.
…-style mode

Same Cartesian (x, v) full-orbit CP as ORBIT_CP6D_BORIS with the same chartmap field
(cart_field) and guiding-centre loss test (cpp_boris_to_gc), but advanced by the
error-controlled adaptive Cash-Karp stepper (odeint_allroutines, the integrator the
GC RK path already uses) instead of the fixed Boris step. This is the independent
cross-check on the Boris fixed-step phase error, matching the adaptive gyro-orbit
ASCOT5 runs as reference.

cpp_rk_step integrates one macrostep of the Lorentz ODE dx/dt = v, dv/dt = qcm v x B
to relative tolerance st%rtol (= namelist relerr); cp_rk_rhs sources B from the same
chartmap and carries a threadprivate warm guess updated per sub-step (the adaptive
step can move many gyroradii). Wired through orbit_model = 8 in simple/simple_main
(validate, field setup, init via init_cp_boris, macrostep dispatch).

Known limitation: at a coarse macrostep the adaptive sub-steps overshoot the LCFS and
cart_field faults there rather than returning the clamped-edge field, so the macrostep
aborts as a numerical fault; a fine macrostep (npoiper2 like Boris) keeps excursions
small and the fault rate Boris-like, but is slow for edge orbits. Graceful past-edge
field handling and event-based loss detection (odeint ode_event_t) would let it use
coarse adaptive steps; tracked for follow-up.
…s test

The chartmap field matches ASCOT5's B_STS to 0.01% in |B| and 0.01deg in direction,
the integrator is equivalent (both fixed-step, SIMPLE finer), relativity is negligible
(gamma-1=9.4e-4) and energy is machine-exact, so the residual CP-vs-ASCOT over-loss is
in the loss detector, not the orbit (see benchmark run_simple/.../orbit_cmp).

The loss keys on the Larmor-corrected guiding centre u_gc (the particle, gyro-excursed
past s=1, is off-chart and cannot be inverted), but u_gc is a second cold-guess locate
of x_gc and carries the residual field-period-seam noise, occasionally returning rho>=1
for a particle that is at mid-radius. Confirm a flagged loss with the robust warm-started
particle locate u_p: a real loss has the particle within a Larmor radius of the edge
(|x_gc-x| is a Larmor radius), so u_gc>=1 while u_p is well inside (GC_PARTICLE_GAP=0.05,
several Larmor radii) is a reconstruction glitch, not a loss. The guiding centre is still
reported in (s,theta,phi). At 1e-5 s spurious losses 5 -> 3, CP confined 0.990 -> 0.996.
@krystophny

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Status update: branch pivoted to Cartesian-chartmap CP/CPP, now matches ASCOT5

This branch has moved well past the original title (VMEC curvilinear 6D integrator).
The CP/CPP 6D full orbit now integrates in Cartesian (x, v) with the chartmap
as field+geometry source (orbit_cpp_boris.f90), per issues #419/#420/#421. Summary
of where it stands:

Validation (reactor W7-X high-mirror, 1000 alphas, 1 ms): SIMPLE CP full orbit
confined fraction 0.896, matching ASCOT5 full orbit (0.898) within the 1000-marker
statistics; SIMPLE GC 0.905, ASCOT5 GC 0.904. CP went 0.794 -> 0.875 -> 0.896 as two
purely-numerical bugs in the chartmap inversion were fixed:

  1. 86b2b2f (+ b3e4b59, 5df5a1d) -- field-period-seam Newton stall faking losses:
    in-wedge geometric toroidal seed + residual-vs-radial-cell loss criterion.
  2. 703404f -- the guiding-centre loss reconstruction locate(x_gc) carried residual
    seam noise; a flagged loss is confirmed against the robust particle locate.

The orbit-level cross-check (benchmark cartesian_cp_test/orbit_cmp/) ruled out every
physics difference: the chartmap field matches ASCOT's B_STS to 0.01% in |B|, 0.01
deg in direction
; the integrators are equivalent (both fixed-step Boris -- ASCOT FO
is simulate_fo_fixed, SIMPLE finer at ~38 vs 20 steps/gyroperiod); relativity is
negligible; energy is machine-exact.

New: 5df5a1d adds ORBIT_CP6D_RK = 8, an adaptive Cash-Karp RK45 full-orbit CP
(libneo odeint_allroutines), the ASCOT5-style independent integrator cross-check.

Long runs: GC / CP-Boris / CP-RK at 100 ms and 1 s are scheduled on acluster (7-day
SLURM walltime). libneo chartmap inversion fixes are in PR itpplasma/libneo#325.

Suggest retitling this PR to reflect the Cartesian-chartmap CP/CPP port, or splitting
the merged work out. Benchmark and full orbit-level writeup: private
itpplasma/benchmark-orbit-proxima#2.

Unify the times_lost.dat convention across integrators. The CP/CPP chartmap paths
produce ierr_orbit==3 field-locate faults (near-axis), which GC never has; the fault
branch wrote times_lost=-1 for these confined survivors while every clean-confined
particle (GC included) gets trace_time. -1 then collided with the never-traced
(skipped passing) marker value, so a script keying 'confined' on times_lost==trace_time
miscounted CP. A fault is not a loss and the particle is confined, so record trace_time
like GC; the fault is tracked by the diag counters. Verified: GC and CP now write an
identical convention (309 skipped t=-1, rest confined t=trace_time, lost 0<t<trace_time).
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