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$ git add {files that were modified by pre-commit}
$ git commit -m "happy days"
... checks happen ...
If it's a pylint error etc. fix up the files ...
$ git add [changes to files it identified as non-compliant]
$ git commit -m "happy days"
$ git push
Note: You will need to re-add any files that pre-commit fixes up for you. If there weren't any and it
passed everything then you may commit what your original staged files