Issues

• ggplot issue

  epigen/RnBeads#71 · Filter by author Jega09 opened on Oct 6, 2025
  1

• Problem with running rnb.run.exploratory

  epigen/RnBeads#70 · Filter by author plamy opened on Sep 17, 2025

• Problem with removal of cross.reactive.removal probes

  epigen/RnBeads#69 · Filter by author plamy opened on Sep 17, 2025

• Funnorm for Epicv2

  epigen/RnBeads#65 · Filter by author sjthursby opened on May 6, 2025
  1

• Error in quality control barplots, if sample number is divisible by sample.batch.size

  epigen/RnBeads#61 · Filter by author FranziskaKimmig opened on Jan 30, 2025
  3

• [ERROR: Change in import.idat.platform by using rnb.options]

  epigen/RnBeads#60 · Filter by author jennyujin22 opened on Dec 29, 2024

• EPIC v2 nv (SNV) probes

  epigen/RnBeads#58 · Filter by author jozsefkun opened on Oct 16, 2024

• dot-dot notation (..count..) deprecated in ggplot2 3.4.0.

  epigen/RnBeads#56 · Filter by author shkushwaha opened on Jun 24, 2024

• hclustfun(distr) : NA/NaN/Inf in foreign function call (arg 10)

  epigen/RnBeads#48 · Filter by author VivianBailey opened on Nov 7, 2023
  1

• Possible to perform cell-type correction and paired analysis?

  epigen/RnBeads#47 · Filter by author KristenKrolick opened on Oct 20, 2023

• Infinium MethylationEPIC v2.0 Kit

  epigen/RnBeads#46 · Filter by author jozsefkun opened on Oct 5, 2023
  33

• Problems: CpG annotation

  epigen/RnBeads#45 · Filter by author dnalinkbi opened on Aug 16, 2023
  1

• Beta Matrix Input Using MMBC

  epigen/RnBeads#43 · Filter by author sjthursby opened on Jun 12, 2023
  5

• Exploratory Analysis: Error in h(simpleError(msg, call))

  epigen/RnBeads#42 · Filter by author jofa123 opened on Jun 2, 2023

• EPIC data normalization

  epigen/RnBeads#41 · Filter by author TatiMoe opened on May 16, 2023
  2

• Error in import data directly from GEO（rnb.read.geo）

  epigen/RnBeads#40 · Filter by author mumdark opened on May 4, 2023
  2

• Problem: Estimating Optimal Numbers of Clusters

  epigen/RnBeads#39 · Filter by author mariacastillo982 opened on Apr 26, 2023
  5

• invalid data.source parameter, bed.dir is not found, or is not directory

  epigen/RnBeads#33 · Filter by author robert-player opened on Nov 8, 2022
  10

• ERROR Undefined platform; unexpected or missing IDAT files

  epigen/RnBeads#32 · Filter by author mishraa31 opened on Oct 13, 2022
  2

• Is ~sample_type + time_point analysis possible in rnb.execute.computeDiffMeth?

  epigen/RnBeads#31 · Filter by author naumenko-sa opened on May 11, 2022

• RnBeads error on HPC

  epigen/RnBeads#30 · Filter by author bioinfonext opened on Mar 14, 2022

• Implement bead count filtering for microarrays

  enhancement
  epigen/RnBeads#19 · Filter by author schmic05 opened on Feb 17, 2021

• Restartable analysis

  enhancement
  epigen/RnBeads#16 · Filter by author demuellae opened on Feb 2, 2021
  1

• Functional normalization for EPIC data

  question
  epigen/RnBeads#15 · Filter by author schmic05 opened on Jan 26, 2021
  1

• Setting options for RnBeads: cell-type and diff. methylation for continuous data

  epigen/RnBeads#13 · Filter by author samuel-carleial opened on Dec 18, 2020
  1