Add GHA workflows to capture outputs from test reports for dsBase and dsBaseClient

.github/workflows/dsBaseClient_test_suite_results.yaml

@@ -0,0 +1,63 @@
+name: Collect dsBaseClient test suite results
+
+on:
+  schedule:
+    - cron: "0 */6 * * *"     # every 6 hours
+  workflow_dispatch:          # allow manual triggering
+
+jobs:
+  collect-results:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write   # we need to push into testStatus
+
+    env:
+      REPO_OWNER: ${{ github.repository_owner }}
+      TARGET_BRANCH: v6.3.5-dev             # Update to latest version
+      TARGET_OUTPUTS: dsbaseclient-logs
+      TARGET_PROJECT: dsBaseClient
+      TARGET_WORKFLOW: dsBaseClient_test_suite.yaml
+
+    steps:
+      - name: Checkout testStatus
+        uses: actions/checkout@v4
+        with:
+          path: testStatus
+
+      - name: Download artifacts
+        uses: dawidd6/action-download-artifact@v6
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          repo: ${{ env.REPO_OWNER }}/${{ env.TARGET_PROJECT }}
+          workflow: ${{ env.TARGET_WORKFLOW }}
+          workflow_conclusion: success
+          branch: ${{ env.TARGET_BRANCH }}
+          name: ${{ env.TARGET_OUTPUTS }}
+          path: logs-download
+
+      - name: Commit logs into repo
+        run: |
+          cd testStatus
+          branch="${{ env.TARGET_BRANCH }}"
+          base_path="../logs-download/logs/dsBaseClient/${{ env.TARGET_BRANCH }}"
+          latest_dir=$(ls -d "$base_path"/*/ 2>/dev/null | sort -V | head -n 1)
+          runid=$(basename "$latest_dir")
+
+          # set up docs and logs directories
+          mkdir -p logs/dsBaseClient/${branch}/${runid}
+          mkdir -p docs/dsBaseClient/${branch}/${runid}
+
+          # set up latest directory
+          rm -rf docs/dsBaseClient/${branch}/latest
+          mkdir -p docs/dsBaseClient/${branch}/latest
+
+          # copy new contents
+          cp -r ../logs-download/logs/dsBaseClient/${branch}/${runid}/* logs/dsBaseClient/${branch}/${runid}/
+          cp -r ../logs-download/docs/dsBaseClient/${branch}/${runid}/* docs/dsBaseClient/${branch}/${runid}/
+          cp -r ../logs-download/docs/dsBaseClient/${branch}/latest/* docs/dsBaseClient/${branch}/latest/
+
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+          git add .
+          git commit -m "Results from test suite for ${{ env.TARGET_PROJECT}}/$branch@${runid}. For details, see https://github.com/${{ env.REPO_OWNER }}/${{ env.TARGET_PROJECT}}/actions/runs/${runid} " || echo "No changes"
+          git push

.github/workflows/dsBase_test_suite_results.yaml

@@ -0,0 +1,63 @@
+name: Collect dsBase test suite results
+
+on:
+  schedule:
+    - cron: "0 */6 * * *"     # every 6 hours
+  workflow_dispatch:          # allow manual triggering
+
+jobs:
+  collect-results:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write   # we need to push into testStatus
+
+    env:
+      REPO_OWNER: ${{ github.repository_owner }}
+      TARGET_BRANCH: v6.3.5-dev             # Update to latest version
+      TARGET_OUTPUTS: dsbase-logs
+      TARGET_PROJECT: dsBase
+      TARGET_WORKFLOW: dsBase_test_suite.yaml
+
+    steps:
+      - name: Checkout testStatus
+        uses: actions/checkout@v4
+        with:
+          path: testStatus
+
+      - name: Download artifacts
+        uses: dawidd6/action-download-artifact@v6
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          repo: ${{ env.REPO_OWNER }}/${{ env.TARGET_PROJECT }}
+          workflow: ${{ env.TARGET_WORKFLOW }}
+          workflow_conclusion: success
+          branch: ${{ env.TARGET_BRANCH }}
+          name: ${{ env.TARGET_OUTPUTS }}
+          path: logs-download
+
+      - name: Commit logs into repo
+        run: |
+          cd testStatus
+          branch="${{ env.TARGET_BRANCH }}"
+          base_path="../logs-download/logs/dsBase/${{ env.TARGET_BRANCH }}"
+          latest_dir=$(ls -d "$base_path"/*/ 2>/dev/null | sort -V | head -n 1)
+          runid=$(basename "$latest_dir")
+
+          # set up docs and logs directories
+          mkdir -p logs/dsBase/${branch}/${runid}
+          mkdir -p docs/dsBase/${branch}/${runid}
+
+          # set up latest directory
+          rm -rf docs/dsBase/${branch}/latest
+          mkdir -p docs/dsBase/${branch}/latest
+
+          # copy new contents
+          cp -r ../logs-download/logs/dsBase/${branch}/${runid}/* logs/dsBase/${branch}/${runid}/
+          cp -r ../logs-download/docs/dsBase/${branch}/${runid}/* docs/dsBase/${branch}/${runid}/
+          cp -r ../logs-download/docs/dsBase/${branch}/latest/* docs/dsBase/${branch}/latest/
+
+          git config --global user.email "github-actions[bot]@users.noreply.github.com"
+          git config --global user.name "github-actions[bot]"
+          git add .
+          git commit -m "Results from test suite for ${{ env.TARGET_PROJECT}}/$branch@${runid}. For details, see https://github.com/${{ env.REPO_OWNER }}/${{ env.TARGET_PROJECT}}/actions/runs/${runid} " || echo "No changes"
+          git push

logs/dsBase/v6.3.5-dev/.LATEST

@@ -1 +1 @@
-17883012956-1/
+17883012956-1/

logs/dsBase/v6.3.5-dev/17882711543-1/17882711543-1.txt

@@ -0,0 +1,3 @@
+branch:v6.3.5-dev
+os:Ubuntu 24.04.3 LTS
+R:R version 4.5.1 (2025-06-13) -- "Great Square Root"

logs/dsBase/v6.3.5-dev/17882711543-1/2025-09-20_covr_and_test_results.csv

@@ -0,0 +1,90 @@
+"fn_name","fn_name_sub","script_url","test_class","file_coverage","test_url","tests","skipped","failures","errors","time"
+"asIntegerDS","","https://github.com/villegar/dsBase/blob/master/R/asIntegerDS.R","arg-",100,,"1","0","0","0","0.039"
+"asLogicalDS","","https://github.com/villegar/dsBase/blob/master/R/asLogicalDS.R","arg-",100,,"3","0","0","0","0.062"
+"dataFrameFillDS","","https://github.com/villegar/dsBase/blob/master/R/dataFrameFillDS.R","arg-",93.33,,"4","0","0","0","0.113"
+"dataFrameSortDS","","https://github.com/villegar/dsBase/blob/master/R/dataFrameSortDS.R","arg-",77.78,,"1","0","0","0","0.04"
+"uniqueDS","","https://github.com/villegar/dsBase/blob/master/R/uniqueDS.R","arg-",100,,"4","0","0","0","0.038"
+"meanDS","","https://github.com/villegar/dsBase/blob/master/R/meanDS.R","disc-",100,,"1","0","0","0","0.018"
+"varDS","","https://github.com/villegar/dsBase/blob/master/R/varDS.R","disc-",100,,"1","0","0","0","0.021"
+"meanDS","","https://github.com/villegar/dsBase/blob/master/R/meanDS.R","perf-",100,,"1","1","0","0","0.009"
+"varDS","","https://github.com/villegar/dsBase/blob/master/R/varDS.R","perf-",100,,"1","1","0","0","0.025"
+"BooleDS","","https://github.com/villegar/dsBase/blob/master/R/BooleDS.R","smk-",75,,"126","0","0","0","0.34"
+"absDS","","https://github.com/villegar/dsBase/blob/master/R/absDS.R","smk-",100,,"52","0","0","0","0.129"
+"asCharacterDS","","https://github.com/villegar/dsBase/blob/master/R/asCharacterDS.R","smk-",100,,"23","0","0","0","0.059"
+"asDataMatrixDS","","https://github.com/villegar/dsBase/blob/master/R/asDataMatrixDS.R","smk-",66.67,,"17","0","0","0","0.035"
+"asFactorDS1","","https://github.com/villegar/dsBase/blob/master/R/asFactorDS1.R","smk-",62.5,,"5","0","0","0","0.016"
+"asFactorDS2","","https://github.com/villegar/dsBase/blob/master/R/asFactorDS2.R","smk-",100,,"47","0","0","0","0.082"
+"asFactorSimpleDS","","https://github.com/villegar/dsBase/blob/master/R/asFactorSimpleDS.R","smk-",100,,"17","0","0","0","0.047"
+"asIntegerDS","","https://github.com/villegar/dsBase/blob/master/R/asIntegerDS.R","smk-",100,,"20","0","0","0","0.046"
+"asListDS","","https://github.com/villegar/dsBase/blob/master/R/asListDS.R","smk-",81.82,,"8","0","0","0","0.023"
+"asLogicalDS","","https://github.com/villegar/dsBase/blob/master/R/asLogicalDS.R","smk-",100,,"52","0","0","0","0.115"
+"asMatrixDS","","https://github.com/villegar/dsBase/blob/master/R/asMatrixDS.R","smk-",66.67,,"17","0","0","0","0.036"
+"asNumericDS","","https://github.com/villegar/dsBase/blob/master/R/asNumericDS.R","smk-",83.33,,"92","0","0","0","0.204"
+"aucDS","","https://github.com/villegar/dsBase/blob/master/R/aucDS.R","smk-",86.67,,"6","0","0","0","0.09"
+"bp_standardsDS","","https://github.com/villegar/dsBase/blob/master/R/bp_standardsDS.R","smk-",88.89,,"20","0","0","0","0.133"
+"cDS","","https://github.com/villegar/dsBase/blob/master/R/cDS.R","smk-",100,,"18","0","0","0","0.047"
+"cbindDS","","https://github.com/villegar/dsBase/blob/master/R/cbindDS.R","smk-",77.78,,"8","0","0","0","0.021"
+"changeRefGroupDS","","https://github.com/villegar/dsBase/blob/master/R/changeRefGroupDS.R","smk-",100,,"32","0","0","0","0.064"
+"checkNegValueDS","","https://github.com/villegar/dsBase/blob/master/R/checkNegValueDS.R","smk-",100,,"12","0","0","0","0.034"
+"classDS","","https://github.com/villegar/dsBase/blob/master/R/classDS.R","smk-",100,,"56","0","0","0","0.154"
+"colnamesDS","","https://github.com/villegar/dsBase/blob/master/R/colnamesDS.R","smk-",100,,"8","0","0","0","0.032"
+"completeCasesDS","","https://github.com/villegar/dsBase/blob/master/R/completeCasesDS.R","smk-",72.73,,"79","0","0","0","0.186"
+"corDS","","https://github.com/villegar/dsBase/blob/master/R/corDS.R","smk-",81.82,,"144","0","0","0","0.386"
+"corTestDS","","https://github.com/villegar/dsBase/blob/master/R/corTestDS.R","smk-",100,,"356","0","0","0","0.596"
+"covDS","","https://github.com/villegar/dsBase/blob/master/R/covDS.R","smk-",59.57,,"87","0","0","0","0.383"
+"dataFrameDS","","https://github.com/villegar/dsBase/blob/master/R/dataFrameDS.R","smk-",65.38,,"18","0","0","0","0.066"
+"dataFrameFillDS","","https://github.com/villegar/dsBase/blob/master/R/dataFrameFillDS.R","smk-",93.33,,"83","0","0","0","0.197"
+"dataFrameSortDS","","https://github.com/villegar/dsBase/blob/master/R/dataFrameSortDS.R","smk-",77.78,,"276","0","0","0","0.597"
+"dataFrameSubsetDS1","","https://github.com/villegar/dsBase/blob/master/R/dataFrameSubsetDS1.R","smk-",52.54,,"14","0","0","0","0.17"
+"dataFrameSubsetDS2","","https://github.com/villegar/dsBase/blob/master/R/dataFrameSubsetDS2.R","smk-",41.23,,"11","0","0","0","0.162"
+"densityGridDS","","https://github.com/villegar/dsBase/blob/master/R/densityGridDS.R","smk-",86.36,,"6","0","0","0","0.023"
+"dimDS","","https://github.com/villegar/dsBase/blob/master/R/dimDS.R","smk-",100,,"8","0","0","0","0.029"
+"extract","","https://github.com/villegar/dsBase/blob/master/R/extract.R","smk-",100,,"48","0","0","0","0.124"
+"gamlssDS","","https://github.com/villegar/dsBase/blob/master/R/gamlssDS.R","smk-",74.76,,"21","0","0","0","0.081"
+"getWGSRDS","","https://github.com/villegar/dsBase/blob/master/R/getWGSRDS.R","smk-",79.75,,"60","0","0","0","0.342"
+"hetcorDS","","https://github.com/villegar/dsBase/blob/master/R/hetcorDS.R","smk-",100,,"31","0","0","0","0.088"
+"igb_standardsDS","","https://github.com/villegar/dsBase/blob/master/R/igb_standardsDS.R","smk-",58.12,,"96","0","0","0","0.543"
+"isNaDS","","https://github.com/villegar/dsBase/blob/master/R/isNaDS.R","smk-",100,,"18","0","0","0","0.049"
+"isValidDS","","https://github.com/villegar/dsBase/blob/master/R/isValidDS.R","smk-",94.12,,"63","0","0","0","0.182"
+"kurtosisDS1","","https://github.com/villegar/dsBase/blob/master/R/kurtosisDS1.R","smk-",85,,"24","0","0","0","0.095"
+"kurtosisDS2","","https://github.com/villegar/dsBase/blob/master/R/kurtosisDS2.R","smk-",76.92,,"10","0","0","0","0.028"
+"lengthDS","","https://github.com/villegar/dsBase/blob/master/R/lengthDS.R","smk-",100,,"8","0","0","0","0.035"
+"levelsDS","","https://github.com/villegar/dsBase/blob/master/R/levelsDS.R","smk-",76.92,,"10","0","0","0","0.037"
+"listDS","","https://github.com/villegar/dsBase/blob/master/R/listDS.R","smk-",100,,"8","0","0","0","0.025"
+"listDisclosureSettingsDS","","https://github.com/villegar/dsBase/blob/master/R/listDisclosureSettingsDS.R","smk-",100,,"35","0","0","0","0.077"
+"lsDS","","https://github.com/villegar/dsBase/blob/master/R/lsDS.R","smk-",84.62,,"12","0","0","0","0.085"
+"meanDS","","https://github.com/villegar/dsBase/blob/master/R/meanDS.R","smk-",100,,"36","0","0","0","0.085"
+"messageDS","","https://github.com/villegar/dsBase/blob/master/R/messageDS.R","smk-",100,,"19","0","0","0","0.088"
+"metadataDS","","https://github.com/villegar/dsBase/blob/master/R/metadataDS.R","smk-",80,,"10","0","0","0","0.054"
+"miceDS","","https://github.com/villegar/dsBase/blob/master/R/miceDS.R","smk-",53.33,,"20","0","0","0","0.843"
+"minMaxRandDS","","https://github.com/villegar/dsBase/blob/master/R/minMaxRandDS.R","smk-",85.71,,"4","0","0","0","0.207"
+"namesDS","","https://github.com/villegar/dsBase/blob/master/R/namesDS.R","smk-",70.59,,"8","0","0","0","0.054"
+"numNaDS","","https://github.com/villegar/dsBase/blob/master/R/numNaDS.R","smk-",100,,"6","0","0","0","0.026"
+"quantileMeanDS","","https://github.com/villegar/dsBase/blob/master/R/quantileMeanDS.R","smk-",87.5,,"40","0","0","0","0.095"
+"rBinomDS","","https://github.com/villegar/dsBase/blob/master/R/rBinomDS.R","smk-",100,,"20","0","0","0","0.089"
+"rNormDS","","https://github.com/villegar/dsBase/blob/master/R/rNormDS.R","smk-",100,,"20","0","0","0","0.093"
+"rPoisDS","","https://github.com/villegar/dsBase/blob/master/R/rPoisDS.R","smk-",100,,"20","0","0","0","0.068"
+"rUnifDS","","https://github.com/villegar/dsBase/blob/master/R/rUnifDS.R","smk-",100,,"20","0","0","0","0.093"
+"rangeDS","","https://github.com/villegar/dsBase/blob/master/R/rangeDS.R","smk-",80,,"8","0","0","0","0.043"
+"rbindDS","","https://github.com/villegar/dsBase/blob/master/R/rbindDS.R","smk-",100,,"15","0","0","0","0.041"
+"recodeLevelsDS","","https://github.com/villegar/dsBase/blob/master/R/recodeLevelsDS.R","smk-",83.33,,"8","0","0","0","0.026"
+"recodeValuesDS","","https://github.com/villegar/dsBase/blob/master/R/recodeValuesDS.R","smk-",78.08,,"45","0","0","0","0.21"
+"replaceNaDS","","https://github.com/villegar/dsBase/blob/master/R/replaceNaDS.R","smk-",69.23,,"10","0","0","0","0.032"
+"rmDS","","https://github.com/villegar/dsBase/blob/master/R/rmDS.R","smk-",89.47,,"49","0","0","0","0.164"
+"rowColCalcDS","","https://github.com/villegar/dsBase/blob/master/R/rowColCalcDS.R","smk-",78.57,,"24","0","0","0","0.083"
+"sampleDS","","https://github.com/villegar/dsBase/blob/master/R/sampleDS.R","smk-",65.83,,"11","0","0","0","0.033"
+"seqDS","","https://github.com/villegar/dsBase/blob/master/R/seqDS.R","smk-",58.82,,"41","0","0","0","0.154"
+"setFilterDS","","https://github.com/villegar/dsBase/blob/master/R/setFilterDS.R","smk-",100,,"6","0","0","0","0.029"
+"setSeedDS","","https://github.com/villegar/dsBase/blob/master/R/setSeedDS.R","smk-",100,,"3","0","0","0","0.022"
+"skewnessDS1","","https://github.com/villegar/dsBase/blob/master/R/skewnessDS1.R","smk-",85,,"24","0","0","0","0.1"
+"skewnessDS2","","https://github.com/villegar/dsBase/blob/master/R/skewnessDS2.R","smk-",71.43,,"10","0","0","0","0.032"
+"sqrtDS","","https://github.com/villegar/dsBase/blob/master/R/sqrtDS.R","smk-",100,,"57","0","0","0","0.181"
+"subsetByClassDS","","https://github.com/villegar/dsBase/blob/master/R/subsetByClassDS.R","smk-",95.65,,"24","0","0","0","0.094"
+"subsetDS","","https://github.com/villegar/dsBase/blob/master/R/subsetDS.R","smk-",39.62,,"50","0","0","0","0.177"
+"tapplyDS",".assign","https://github.com/villegar/dsBase/blob/master/R/tapplyDS.assign.R","smk-",28.37,,"14","0","0","0","0.05"
+"tapplyDS","","https://github.com/villegar/dsBase/blob/master/R/tapplyDS.R","smk-",52.08,,"78","0","0","0","0.378"
+"testObjExistsDS","","https://github.com/villegar/dsBase/blob/master/R/testObjExistsDS.R","smk-",100,,"80","0","0","0","0.229"
+"unListDS","","https://github.com/villegar/dsBase/blob/master/R/unListDS.R","smk-",66.67,,"16","0","0","0","0.054"
+"uniqueDS","","https://github.com/villegar/dsBase/blob/master/R/uniqueDS.R","smk-",100,,"13","0","0","0","0.042"
+"varDS","","https://github.com/villegar/dsBase/blob/master/R/varDS.R","smk-",100,,"42","0","0","0","0.111"
+"vectorDS","","https://github.com/villegar/dsBase/blob/master/R/vectorDS.R","smk-",100,,"18","0","0","0","0.065"

logs/dsBase/v6.3.5-dev/17882711543-1/coveragelist.csv

@@ -0,0 +1,139 @@
+"","filecoverage","totalcoverage"
+"R/absDS.R",100,29.43
+"R/asCharacterDS.R",100,29.43
+"R/asDataMatrixDS.R",66.67,29.43
+"R/asFactorDS1.R",62.5,29.43
+"R/asFactorDS2.R",100,29.43
+"R/asFactorSimpleDS.R",100,29.43
+"R/asIntegerDS.R",100,29.43
+"R/asListDS.R",81.82,29.43
+"R/asLogicalDS.R",100,29.43
+"R/asMatrixDS.R",66.67,29.43
+"R/asNumericDS.R",83.33,29.43
+"R/aucDS.R",86.67,29.43
+"R/blackBoxDS.R",0,29.43
+"R/blackBoxRanksDS.R",0,29.43
+"R/BooleDS.R",75,29.43
+"R/boxPlotGG_data_Treatment_numericDS.R",0,29.43
+"R/boxPlotGG_data_TreatmentDS.R",0,29.43
+"R/boxPlotGGDS.R",0,29.43
+"R/bp_standardsDS.R",88.89,29.43
+"R/cbindDS.R",77.78,29.43
+"R/cDS.R",100,29.43
+"R/changeRefGroupDS.R",100,29.43
+"R/checkNegValueDS.R",100,29.43
+"R/checkPermissivePrivacyControlLevel.R",80,29.43
+"R/classDS.R",100,29.43
+"R/colnamesDS.R",100,29.43
+"R/completeCasesDS.R",72.73,29.43
+"R/corDS.R",81.82,29.43
+"R/corTestDS.R",100,29.43
+"R/covDS.R",59.57,29.43
+"R/dataFrameDS.R",65.38,29.43
+"R/dataFrameFillDS.R",93.33,29.43
+"R/dataFrameSortDS.R",77.78,29.43
+"R/dataFrameSubsetDS1.R",52.54,29.43
+"R/dataFrameSubsetDS2.R",41.23,29.43
+"R/densityGridDS.R",86.36,29.43
+"R/dimDS.R",100,29.43
+"R/dmtC2SDS.R",0,29.43
+"R/elsplineDS.R",0,29.43
+"R/extract.R",100,29.43
+"R/extractQuantilesDS1.R",0,29.43
+"R/extractQuantilesDS2.R",0,29.43
+"R/gamlssDS.R",74.76,29.43
+"R/getWGSRDS.R",79.75,29.43
+"R/glmDS1.R",0,29.43
+"R/glmDS2.R",0,29.43
+"R/glmerSLMADS.assign.R",0,29.43
+"R/glmerSLMADS2.R",0,29.43
+"R/glmPredictDS.ag.R",0,29.43
+"R/glmPredictDS.as.R",0,29.43
+"R/glmSLMADS.assign.R",0,29.43
+"R/glmSLMADS1.R",0,29.43
+"R/glmSLMADS2.R",0,29.43
+"R/glmSummaryDS.ag.R",0,29.43
+"R/glmSummaryDS.as.R",0,29.43
+"R/heatmapPlotDS.R",0,29.43
+"R/hetcorDS.R",100,29.43
+"R/histogramDS1.R",0,29.43
+"R/histogramDS2.R",0,29.43
+"R/igb_standardsDS.R",58.12,29.43
+"R/isNaDS.R",100,29.43
+"R/isValidDS.R",94.12,29.43
+"R/kurtosisDS1.R",85,29.43
+"R/kurtosisDS2.R",76.92,29.43
+"R/lengthDS.R",100,29.43
+"R/levelsDS.R",76.92,29.43
+"R/lexisDS1.R",0,29.43
+"R/lexisDS2.R",0,29.43
+"R/lexisDS3.R",0,29.43
+"R/listDisclosureSettingsDS.R",100,29.43
+"R/listDS.R",100,29.43
+"R/lmerSLMADS.assign.R",0,29.43
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