CCDL Analysis Scripts

These are the analysis scripts used by CCDL for fMRI and DCM analysis

Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
older		older
#extract-voi-data.sh#		#extract-voi-data.sh#
#generate-first-level.sh#		#generate-first-level.sh#
README.md		README.md
add-contrasts-first-level.sh		add-contrasts-first-level.sh
bar2m.py		bar2m.py
bar2m2.py		bar2m2.py
bar2m_dcm.py		bar2m_dcm.py
bar2m_dcm.py~		bar2m_dcm.py~
bar2m_jaa.py		bar2m_jaa.py
clean_biav.py		clean_biav.py
convert_to_emotiv.sh		convert_to_emotiv.sh
count_art_regressors.py		count_art_regressors.py
dcm-extract-model-data.sh		dcm-extract-model-data.sh
dcm-extract-model-data.sh~		dcm-extract-model-data.sh~
dcm-generate-bms-analysis.sh		dcm-generate-bms-analysis.sh
dcm-generate-bms-analysis.sh~		dcm-generate-bms-analysis.sh~
dcm-generate-first-level.sh		dcm-generate-first-level.sh
dcm-generate-models.py		dcm-generate-models.py
dcm-generate-vois.sh		dcm-generate-vois.sh
dcm-plot-vois.py		dcm-plot-vois.py
dcm_baby_model.txt		dcm_baby_model.txt
desk2m.py		desk2m.py
discourse2m.py		discourse2m.py
edf_to_csv.py		edf_to_csv.py
eparse.py		eparse.py
extract-dcm-data.sh		extract-dcm-data.sh
extract-dcm-data.sh~		extract-dcm-data.sh~
extract-voi-data.sh		extract-voi-data.sh
extract-voi-data.sh.gz		extract-voi-data.sh.gz
extract_betas.sh		extract_betas.sh
face.gca		face.gca
generate-contrasts-tsls.py		generate-contrasts-tsls.py
generate-correlation-analysis-2.sh~		generate-correlation-analysis-2.sh~
generate-correlation-analysis.sh		generate-correlation-analysis.sh
generate-correlation-analysis.sh~		generate-correlation-analysis.sh~
generate-first-level.sh		generate-first-level.sh
generate-group-analysis-bayes.sh		generate-group-analysis-bayes.sh
generate-group-analysis.sh		generate-group-analysis.sh
generate-group-analysis2.sh		generate-group-analysis2.sh
generate-individual-first-level.sh		generate-individual-first-level.sh
generate-preprocessing.sh		generate-preprocessing.sh
generate-preprocessing.sh~		generate-preprocessing.sh~
generate-second-level-2.sh		generate-second-level-2.sh
generate-second-level-2.sh~		generate-second-level-2.sh~
generate-second-level.sh		generate-second-level.sh
group-analysis.m		group-analysis.m
inst2m3.py		inst2m3.py
inst2m3b.py		inst2m3b.py
inst2m3c.py		inst2m3c.py
inst2m4.py		inst2m4.py
inst2m5.py		inst2m5.py
inst2m5b.py		inst2m5b.py
inst2mP.py		inst2mP.py
linendings		linendings
mksubjdir		mksubjdir
motiongraph		motiongraph
mri_deface		mri_deface
niftidims.py		niftidims.py
niftidims.py~		niftidims.py~
parseReport.py		parseReport.py
prepare-second-level.sh		prepare-second-level.sh
remove-artifact-step1.sh		remove-artifact-step1.sh
remove-artifact-step2.sh		remove-artifact-step2.sh
result_stats.sh		result_stats.sh
ritl2m.py		ritl2m.py
ritl2m_dcm.py		ritl2m_dcm.py
roi2m.py		roi2m.py
roi2m_dcm.py		roi2m_dcm.py
roi2m_dcm.py~		roi2m_dcm.py~
roi_gnb2m.py		roi_gnb2m.py
roi_gnb2m.py~		roi_gnb2m.py~
sentences2m.py		sentences2m.py
spm12		spm12
spm8		spm8
stitch.sh		stitch.sh
talairach_mixed_with_skull.gca		talairach_mixed_with_skull.gca
template-correlation.m		template-correlation.m
ts2m.py		ts2m.py
ts2m_constant_redux.py		ts2m_constant_redux.py
ts2m_redux.py		ts2m_redux.py
words2m.py		words2m.py

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