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Welcome to the LocText wiki!

Reading Material (Background)

• Shrikant's Master's Thesis, 2015
• Goldberg et al 2015 - Linked annotations: a middle ground for manual curation of biomedical databases and text corpora
• LocText guidelines and LocText page on tagtog
• Binder et al, Jensen, 2014 - COMPARTMENTS: unification and visualization of protein subcellular localization evidence
• Wu Zheng and Catherine Blake, 2015 - Using distant supervised learning to identify protein subcellular localizations from full-text scientific articles
• EPILOC paper
• LocTree 2 paper
• LocTree 3 paper
• VAn Auken et al, 2009 - Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation ~~ Textpresso
• Biomedical Text Mining and Its Applications
• WALLED|Detection of Protein Subcellular Localization Based on a Full Syntactic Parser and Semantic Information
• 2008 - Improving subcellular localization prediction using text classification and the gene ontology
• BioNLP '09 Shared Task
• List Protein subcellular localization prediction tools in Wikipedia
• Liu et al, 2007 - Exploiting Rich Syntactic Information for Relation Extraction from Biomedical Articles

Reading Material (State of The Art)

• http://www.aclweb.org/anthology/W15-1506
• http://www.aclweb.org/anthology/D15-1205
• https://academic.oup.com/database/article/doi/10.1093/database/baw032/2630271/Assessing-the-state-of-the-art-in-biomedical