Issues

• Failed to compile the SnpArrays package using JuliaC

  OpenMendel/SnpArrays.jl#145 · Filter by author JinyanTeng opened on Jun 5, 2026

• Package is broken on 1.12

  OpenMendel/SnpArrays.jl#143 · Filter by author olivierlabayle opened on Oct 9, 2025
  2

• LoopVectorization deprecation

  OpenMendel/SnpArrays.jl#137 · Filter by author kose-y opened on Feb 15, 2024
  1

• Support Absolute path for merge_plink

  OpenMendel/SnpArrays.jl#135 · Filter by author olivierlabayle opened on Dec 4, 2023
  1

• Improved Tiling for Matrix-Vector Products

  OpenMendel/SnpArrays.jl#131 · Filter by author BrendonChau opened on Sep 1, 2023
  8

• LoopVectorization fails on some operations?

  OpenMendel/SnpArrays.jl#121 · Filter by author alanderos91 opened on Oct 28, 2022
  3

• No Mmap option

  OpenMendel/SnpArrays.jl#114 · Filter by author kose-y opened on Dec 7, 2021

• Linear algebra benchmarks are messed up

  OpenMendel/SnpArrays.jl#111 · Filter by author biona001 opened on Sep 6, 2021
  1

• SnpArray view vs SnpArray.data matrix [question]

  OpenMendel/SnpArrays.jl#110 · Filter by author pdimens opened on Sep 6, 2021
  3

• Convert SnpArray into matrix{Int} doesn't obey conversion convention

  OpenMendel/SnpArrays.jl#79 · Filter by author biona001 opened on Oct 14, 2020
  5

• Add KING methods for genetic relationship matrix calculation

  feature requesthelp wanted
  OpenMendel/SnpArrays.jl#71 · Filter by author Hua-Zhou opened on Aug 1, 2020
  4

  

• LD Pruning of SNPs

  feature requesthelp wanted
  OpenMendel/SnpArrays.jl#66 · Filter by author kose-y opened on Jul 30, 2020
  4

  

• Add CI test for GPU linear algebra

  OpenMendel/SnpArrays.jl#64 · Filter by author kose-y opened on Jul 26, 2020
  2

• Include random string in default filenames for filter, hcat, vcat, hvcat (?)

  OpenMendel/SnpArrays.jl#50 · Filter by author kose-y opened on Nov 1, 2019

• Problem adding SnpArrays with Julia 1.2

  OpenMendel/SnpArrays.jl#46 · Filter by author richgill8 opened on Oct 18, 2019
  2

• Repeatedly filtering Plink files based on integer indices

  OpenMendel/SnpArrays.jl#41 · Filter by author kose-y opened on Jun 13, 2019
  2

• move positional arguments in filter to keyword arguments

  OpenMendel/SnpArrays.jl#40 · Filter by author Hua-Zhou opened on Mar 18, 2019

• Best way to perform linear algebra on a subset of SnpArray v0.7?

  OpenMendel/SnpArrays.jl#26 · Filter by author biona001 opened on Jan 16, 2019
  1

• need a utility function to split a Plink binary data set into smaller ones according to chromosome and vice versa (combine)

  enhancementhelp wanted
  OpenMendel/SnpArrays.jl#24 · Filter by author Hua-Zhou opened on Dec 5, 2018

• Cannot use view() on A_mul_B!

  OpenMendel/SnpArrays.jl#23 · Filter by author biona001 opened on Aug 27, 2018

• Feature request: calculate GRM within pedigrees

  OpenMendel/SnpArrays.jl#19 · Filter by author Hua-Zhou opened on Sep 7, 2017

• nmap unaligned pointers in julia 0.7

  OpenMendel/SnpArrays.jl#13 · Filter by author msuchard opened on Jul 12, 2017
  

• Convert SnpArray to NullableArray

  OpenMendel/SnpArrays.jl#10 · Filter by author Hua-Zhou opened on Jun 14, 2017

• Travis failure on Julia v0.5 with linux/osx

  OpenMendel/SnpArrays.jl#9 · Filter by author Hua-Zhou opened on Mar 22, 2017

• no A_mul_B!, Ac_mul_B! routines

  OpenMendel/SnpArrays.jl#2 · Filter by author klkeys opened on Jun 17, 2016
  4