Preproc main merge prep - #158

Merged

IvanARashid merged 79 commits into

preproc-mainfrom

preproc-main-merge-prep

May 4, 2026

Commits on Sep 25, 2025

Update simple_test_run_of_algorithm.py
IvanARashid
committed
b0e686e
Merge branch 'main' into wrapper_dev
IvanARashid
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5b4f00e
Added default bounds and initial guess
IvanARashid
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6d2bec5

Commits on Oct 15, 2025

Merge branch 'main' into wrapper_dev
IvanARashid
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9df65d8
Added default bounds and initial guess as dictionaries in OsipiBase
IvanARashid
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29f19c0
Dictionary implementation of bounds and initial guesses in testing code
IvanARashid
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7dca19a

Commits on Oct 16, 2025

Bug fix
IvanARashid
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22585e3

Commits on Oct 20, 2025

Adapted bounds. But matlab testing is not working for me, function is not being found.
IvanARashid
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f6f6c81
Dictionary bounds
IvanARashid
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965289a

Commits on Oct 21, 2025

Dictionary bounds and initial guess
IvanARashid
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fa70dcd
Dictionary bounds and initial guesses
IvanARashid
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558de67
Dictionary bounds and initial guesses where applicable
IvanARashid
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db3eb09
Adjusted documentation for dictionary bounds and initial guesses
IvanARashid
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f6db6b6
Merge branch 'main' into wrapper_dev
IvanARashid
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0f6dedc
Update simple_test_run_of_algorithm.py
IvanARashid
committed
d7c67dd

Commits on Nov 19, 2025

Bug fixes to bounds and initial guesses in my algorithms
IvanARashid
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f662836
Dictionary update of use_bounds and use_initial_guess
IvanARashid
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5b92c3a
Bounds update
IvanARashid
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bf52071
Bounds update
IvanARashid
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51541d5
Dictionary update to use_initial_guess and use_bounds
IvanARashid
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0eafe9d
Dictionary update for use_bounds and use_initial_guess, and added default b-value threshold
IvanARashid
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155eb5f
Merge branch 'main' into wrapper_dev
IvanARashid
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f72458f
testing implemented and algorithms updated
oliverchampion
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cba7921
Update TCML_TechnionIIT_lsq_sls_BOBYQA.py
oliverchampion
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c4fafb7

Commits on Nov 21, 2025

Merge pull request #131 from OSIPI/wrapper_dev_testing
IvanARashid
authored
df05f70

Commits on Nov 24, 2025

Fix type for blim
IvanARashid
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34450ba

Commits on Dec 12, 2025

ignore failures. Tinkered with IVIMNET bounds
oliverchampion
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6193df2
fix AI failures
oliverchampion
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6f833d8

Commits on Dec 16, 2025

floating point error solved
oliverchampion
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c75bd32

Commits on Jan 20, 2026

Merge pull request #133 from OSIPI/wrapper_dev_testing
oliverchampion
authored
848a106

Commits on Jan 22, 2026

Merge branch 'main' into wrapper_dev
IvanARashid
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558165a

Commits on Jan 23, 2026

testing a fix by turning bounds into floats for the failing algorithms
IvanARashid
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7bf6d2c
testing new fix.. This is already passing locally but not on github
IvanARashid
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0283659
One more try
IvanARashid
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9c76169
Update TCML_TechnionIIT_lsq_sls_BOBYQA.py
IvanARashid
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eb831f1
Update TCML_TechnionIIT_lsq_sls_BOBYQA.py
IvanARashid
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83b3019
Update TCML_TechnionIIT_lsq_sls_trf.py
IvanARashid
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dd30546
Update TCML_TechnionIIT_lsq_sls_lm.py
IvanARashid
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73bc88e
Update TCML_TechnionIIT_lsqBOBYQA.py
IvanARashid
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5092b4f
Update TCML_TechnionIIT_lsqlm.py
IvanARashid
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f5804ca
Update TCML_TechnionIIT_lsqtrf.py
IvanARashid
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2024ccf
Update TCML_TechnionIIT_SLS.py
IvanARashid
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cd5b488

Commits on Jan 28, 2026

Update xfail logic and test skipping for TCML_TechnionIIT_lsqBOBYQA
oliverchampion
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b4e9fc3

Commits on Jan 29, 2026

Merge pull request #137 from OSIPI/wrapper_dev_testing
IvanARashid
authored
ba924e8

Commits on Feb 2, 2026

Merge pull request #126 from OSIPI/wrapper_dev
IvanARashid
authored
7e8f0cc

Commits on Feb 13, 2026

Update IAR_LU_modified_mix.py
IvanARashid
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61f59b5
Filter f extremes and deduplicate generic signals
oliverchampion
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7393704

Commits on Feb 16, 2026

Commits on Feb 26, 2026

Merge pull request #139 from OSIPI/wrapper_dev_testing
etpeterson
authored
d45d9fe

Commits on Feb 27, 2026

fix: replace bare except with except Exception in osipi_fit_full_volume
Devguru
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b8971d7

Commits on Mar 1, 2026

feat: add WLS IVIM fitting algorithm (Feature #110)
Devguru
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04b1ac3

Commits on Mar 10, 2026

Merge pull request #145 from Devguru-codes/fix-bare-except-full-volume
oliverchampion
authored
c1ef262

Commits on Mar 12, 2026

Merge pull request #141 from OSIPI/analysis/update-spreadsheet
etpeterson
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19d5f75
feat: add RLM method toggle to WLS IVIM fitting
Devguru
committed
1fbd37e

Commits on Mar 13, 2026

set required_bounds_optional and required_initial_guess_optional to False per review
Devguru
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edd5352

Commits on Apr 28, 2026

Commits on May 4, 2026

Added fitting and preprocessing folders in /src/original, and adjusted the imports in /standardized
IvanARashid
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3a6c9f9
Merge branch 'main' into preproc-main-merge-prep
IvanARashid
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3800568
added nipype
IvanARashid
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2435de7
added itk
IvanARashid
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58d664e
Update requirements.txt
IvanARashid
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a6ba403
Holding the implementation of some stuff, a package doesn't seem to work with newer versions of python
IvanARashid
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22e1804
moved to fitting folder
IvanARashid
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4a87c64
renamed so that theyre not being run
IvanARashid
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3bd5287
renamed
IvanARashid
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e6f5df4
Ignore tests that are wip
IvanARashid
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1b341bf
Update DT_IIITN_WLS.py
IvanARashid
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d958c20