Add the INSPIRE dataset

[mmcdermott]

Summary

Registers INSPIRE (perioperative medicine) in src/MEDS_DEV/datasets/INSPIRE/. Extraction is via MEDS_extract-INSPIRE from the upstream inspire-meds package.

Files added:

• dataset.yaml — metadata + build_full shelling out to MEDS_extract-INSPIRE. No build_demo (upstream doesn't ship a demo recipe; Make build_demo optional, skip demo-less datasets in tests #312 makes the key optional and ensures integration tests skip it).
• predicates.yaml — admission/discharge plus a few lab/vital predicates. Regex syntax bugs (^X* form) and commented-out predicate stubs from the contributor's branch were cleaned up.
• requirements.txt — INSPIRE-MEDS==0.0.11.
• refs.bib.
• README.md.

INSPIRE is not added to any task's supported_datasets.

Depends on #312

#312 makes build_demo optional in the registry and skips datasets that don't declare it from the integration test matrix. Targeted at feat/dataset-demo-availability for now; once #312 merges, this PR retargets to dev.

Test plan

• Pre-commit passes.
• Fast test suite passes on top of Make build_demo optional, skip demo-less datasets in tests #312.
• N/A: integration tests skip INSPIRE.

Supersedes / refs

• Carved out of the closed bundled PR Add six new datasets (EHRShot, HIRID, INSPIRE, NWICU, SICdb, eICU) + complete AUMCdb #299 (one PR per dataset).
• Replicates content from @rvandewater's More datasets #258.

🤖 Generated with Claude Code

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ All tests successful. No failed tests found.

Files with missing lines	Coverage Δ
src/MEDS_DEV/datasets/__init__.py	97.43% <100.00%> (+0.06%)	⬆️

[florian6973]

I checked the INSPIRE-MEDS==0.0.11 release, and it appears to be broken because of an incompatible dependency update.

The package declares meds-transforms~=0.2, but INSPIRE_MEDS/pre_MEDS.py still imports and calls hydra_loguru_init from MEDS_transforms.utils. This function is no longer available in meds-transforms 0.2, so importing the ETL module raises an ImportError.

This seems to have been fixed in INSPIRE-MEDS==0.0.12 and above, where the hydra_loguru_init import and call were removed and the dependency was also updated.

[florian6973]

I think I understand why CI did not catch this. Although the dataset-lane (INSPIRE) check is green, INSPIRE has no build_demo command, so it is filtered out of the integration-test parametrization. The resulting empty parametrization is treated as skipped by pytest, and the full-integration job was also skipped.

As a result, INSPIRE-MEDS==0.0.11 was never installed or imported during CI, and MEDS_extract-INSPIRE was not executed. It may be useful to add a lightweight smoke test that installs each dataset’s requirements and verifies that its configured entry-point command can at least be imported or invoked with --help.