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1. varvis-connector varvis-connector Public

   Python package and CLI for data retrieval from Varvis SaaS Platform API.

   Python 8

2. varvis-download varvis-download Public

   A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

   JavaScript 12

3. ont-assembly-snake ont-assembly-snake Public

   Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

   Python 29 3

4. score-assemblies score-assemblies Public

   Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

   Python 28 1