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AF3 backend in pulldown mode overwrites output files instead of creating per-pair directories

Status: Open.

#578 In KosinskiLab/AlphaPulldown;

· abiadak opened on Jan 30, 2026

Resume prediction step over the same conditions

Status: Open.

#577 In KosinskiLab/AlphaPulldown;

· otvrv opened on Jan 30, 2026

--job_index keyword issue

Status: Open.

#576 In KosinskiLab/AlphaPulldown;

· gchojnowski opened on Jan 30, 2026

Availability of precomputed AlphaFold3 features (JSON format)

enhancementNew feature or requestNew feature or request

Status: Open.

#575 In KosinskiLab/AlphaPulldown;

· abiadak opened on Jan 30, 2026

Issue with localcolabfold and create individual features

Status: Open.

#573 In KosinskiLab/AlphaPulldown;

· Simon-Kristl opened on Jan 23, 2026

Obsolete links in example

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#572 In KosinskiLab/AlphaPulldown;

· MaximeSongIdris opened on Jan 23, 2026

jax gpu error

Status: Open.

#571 In KosinskiLab/AlphaPulldown;

· shamphavis opened on Jan 22, 2026

Implementing AlphaFold 3 on non-Slurm cluster

Status: Open.

#565 In KosinskiLab/AlphaPulldown;

· AnastasiiaMamaeva opened on Dec 2, 2025

are all backends supporting chopping?

questionFurther information is requestedFurther information is requested

Status: Open.

#541 In KosinskiLab/AlphaPulldown;

· jkosinski opened on Oct 29, 2025

Move databases to the top?

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#539 In KosinskiLab/AlphaPulldown;

· jkosinski opened on Oct 29, 2025

Quick multimeric template mode doesn't support homo-oligomers

bugSomething isn't workingSomething isn't working

Status: Open.

#471 In KosinskiLab/AlphaPulldown;

· jkosinski opened on Dec 18, 2024

Do not require MSAs for the TrueMultimer default mode

enhancementNew feature or requestNew feature or request

Status: Open.

#465 In KosinskiLab/AlphaPulldown;

· jkosinski opened on Nov 23, 2024