This space is dedicated to hosting the reproducible codebase and computational workflows underpinning the lab’s scientific publications. Each repository is tied to a published study or preprint, providing open access to scripts, pipelines, and analysis tools.
Additionally, a comprehensive directory of the bioinformatics team, coordinated by Baptiste Lamarthée, PhD, is maintained below, listing each member’s role, expertise, and contact information for analysis requests from lab members and collaboration inquiries.
Although each member has its own expertise in various analyses and can be directly contacted, requesting an analysis through the form is preferred, in order to more efficiently assign the workload among the different bioinformaticians.
| Name | Position | Team | Expertise | Portfolio and Contact |
|---|---|---|---|---|
| Alexis Varin, PhD | Research Engineer | TAI-IT | Bulk, scRNAseq, Spatial, Multi-omics... | Alexis-Varin.github.io |
| Julien Viot, MD, PhD | Oncologist | TICI | Bulk, scRNAseq, Proteomics... | jviot.github.io |
| Alexis Overs, MD, PhD | Biologist | TICI | DNA methylation... | aovers.github.io |
| Babacar Ndao | Research Engineer | TICI | Bulk, scRNAseq, TCRseq, WGS/WES... | bndao.github.io |
| Christian Vulpe | Research Engineer | TICI | Bulk, scRNAseq... | ChristianVulpe.github.io |