Issues

• Parallelized version of needlestack.r

  IARCbioinfo/needlestack#195 · Filter by author veenarajaraman opened on Oct 21, 2024

• nextflow no long support DSL1

  IARCbioinfo/needlestack#194 · Filter by author lxm1117 opened on Dec 6, 2023

• --output_vcf parameter doesn't work when including a relative path

  IARCbioinfo/needlestack#192 · Filter by author Fer020707 opened on Jan 23, 2022
  6

• Advice about running on gcs?

  IARCbioinfo/needlestack#190 · Filter by author njbernstein opened on Apr 28, 2021
  1

• migrate to CircleCI 2.0

  bugenhancement
  IARCbioinfo/needlestack#183 · Filter by author tdelhomme opened on Aug 17, 2018
  

• Disambiguation between allelic fraction and allele frequency

  enhancementhelp wanted
  IARCbioinfo/needlestack#181 · Filter by author chabriera opened on Jun 20, 2018 · v1.1
  9

• rename output options

  enhancement
  IARCbioinfo/needlestack#179 · Filter by author mfoll opened on Jun 20, 2018 · v1.1
  

• Input in first process missing

  IARCbioinfo/needlestack#178 · Filter by author luisas opened on Jun 8, 2018
  1

• correct insertion extraction from mpileup

  bugexternal need
  IARCbioinfo/needlestack#175 · Filter by author tdelhomme opened on May 9, 2018 · v1.1
  1

  

• improve output VCF header

  enhancement
  IARCbioinfo/needlestack#155 · Filter by author tdelhomme opened on Mar 14, 2017
  

• Consider removing the BAQ option in samtools mpileup

  IARCbioinfo/needlestack#154 · Filter by author mfoll opened on Mar 8, 2017
  

• Try new robust Negative Binomial regression

  enhancementhelp wantedquestion
  IARCbioinfo/needlestack#143 · Filter by author mfoll opened on Jan 18, 2017
  2