Issues

• Update gdc-client to 1.4

  BD2KGenomics/cgl-docker-lib#290 · Filter by author jvivian opened on Jan 28, 2019
  

• Flappy Jenkins test

  bug
  BD2KGenomics/cgl-docker-lib#276 · Filter by author jvivian opened on Apr 11, 2018

• Open Source License

  BD2KGenomics/cgl-docker-lib#272 · Filter by author Georgehe4 opened on Dec 4, 2017

• Update docker commands for Mango

  BD2KGenomics/cgl-docker-lib#271 · Filter by author Georgehe4 opened on Nov 30, 2017

• need rtg-tools container

  BD2KGenomics/cgl-docker-lib#263 · Filter by author tpesout opened on Sep 1, 2017
  

• Upgrade SNAP to 1.0dev.100

  in progress
  BD2KGenomics/cgl-docker-lib#261 · Filter by author fnothaft opened on Aug 30, 2017
  

• Add retry to docker push in jenkins

  BD2KGenomics/cgl-docker-lib#260 · Filter by author jvivian opened on Aug 30, 2017
  1

• latest does not exist

  BD2KGenomics/cgl-docker-lib#247 · Filter by author antonkulaga opened on Jul 18, 2017
  1

• Refactor spark-and-maven on apache-spark-common

  enhancement
  BD2KGenomics/cgl-docker-lib#244 · Filter by author fnothaft opened on Apr 27, 2017
  

• Factor apt-get commands out

  enhancement
  BD2KGenomics/cgl-docker-lib#243 · Filter by author fnothaft opened on Apr 27, 2017
  2

• command for dockerized rna-seq 3.2.1 - multiple samples using fastq for input

  BD2KGenomics/cgl-docker-lib#242 · Filter by author hbeale opened on Apr 25, 2017

• picardtools needs to specify JAVA_OPTS when invoked

  BD2KGenomics/cgl-docker-lib#233 · Filter by author tpesout opened on Mar 16, 2017
  

• Remove patch that added -M option to bwakit

  BD2KGenomics/cgl-docker-lib#205 · Filter by author jpfeil opened on Nov 11, 2016

• Add -M option to run-bwamem

  BD2KGenomics/cgl-docker-lib#203 · Filter by author jpfeil opened on Nov 9, 2016

• Invoking tabix and bgzip

  BD2KGenomics/cgl-docker-lib#198 · Filter by author adamnovak opened on Oct 18, 2016

• Cross build spark versions

  enhancementin progressspark/adam
  BD2KGenomics/cgl-docker-lib#196 · Filter by author fnothaft opened on Oct 8, 2016
  

• Pipeline image labels are wasteful and misleading

  BD2KGenomics/cgl-docker-lib#191 · Filter by author hannes-ucsc opened on Sep 23, 2016

• Increase Docker cache hits during build

  enhancement
  BD2KGenomics/cgl-docker-lib#179 · Filter by author hannes-ucsc opened on Sep 9, 2016

• Backup images from quay.io to S3

  BD2KGenomics/cgl-docker-lib#175 · Filter by author hannes-ucsc opened on Aug 30, 2016

• Refactor wrapper functionality out of cgl-docker-lib

  enhancement
  BD2KGenomics/cgl-docker-lib#170 · Filter by author nsjake opened on Aug 23, 2016

• Add R to GATK container

  enhancement
  BD2KGenomics/cgl-docker-lib#169 · Filter by author jpfeil opened on Aug 22, 2016
  1

• Consider retaining the STAR log in rnaseq-cgl-pipeline

  enhancement
  BD2KGenomics/cgl-docker-lib#167 · Filter by author hbeale opened on Aug 16, 2016
  2

• Make oncotator container

  enhancement
  BD2KGenomics/cgl-docker-lib#163 · Filter by author jpfeil opened on Aug 4, 2016

• Explore valid networking modes for toil-appliance containers

  enhancement
  BD2KGenomics/cgl-docker-lib#162 · Filter by author fnothaft opened on Aug 3, 2016
  1

  

• Clean up build

  enhancement
  BD2KGenomics/cgl-docker-lib#161 · Filter by author fnothaft opened on Aug 3, 2016
  1