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The Enpass application on your device may have automatically updated. New versions of Enpass (v6.8 and above) have migrated to SQLCipher version 4, a newer database encryption standard.
The enpass-cli version 1.6.5 tool that you install from Homebrew can be built with the older SQLCipher library (v3).
When enpass-cli tries to open a database file created by SQLCipher v4, it does not recognize the format and reports the error "file is not a database".