From 88ade473ccdc0162477e9f65be96268e3634ffba Mon Sep 17 00:00:00 2001
From: Tiago Lubiana <tiago.lubiana.alves@usp.br>
Date: Fri, 8 May 2026 06:06:04 -0300
Subject: [PATCH 1/2] Fix typo in ANSOM title + some cleanups

---
 src/ontology/fbbi-edit.owl | 16 +++++++++++-----
 1 file changed, 11 insertions(+), 5 deletions(-)

diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl
index b6d4245..8497067 100644
--- a/src/ontology/fbbi-edit.owl
+++ b/src/ontology/fbbi-edit.owl
@@ -3550,23 +3550,29 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00000347> "scanning tunneling microscopy")
 SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00000347> <http://purl.obolibrary.org/obo/FBbi_00000344>)
 
-# Class: <http://purl.obolibrary.org/obo/FBbi_00000348> (nearfield scanning optical microscopy (ANSOM))
+# Class: <http://purl.obolibrary.org/obo/FBbi_00000348> (nearfield scanning optical microscopy)
 
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/FBbi_00000348> "jm")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/FBbi_00000348> "2010-03-09T10:19:35Z")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000348> "NSOM")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000348> "SNOM")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000348> "scanning near-field optical microscopy")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/FBbi_00000348> "image")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/FBbi_00000348> "FBbi:00000348")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00000348> "nearfield scanning optical microscopy (ANSOM)")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00000348> "nearfield scanning optical microscopy")
 SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00000348> <http://purl.obolibrary.org/obo/FBbi_00000344>)
 
-# Class: <http://purl.obolibrary.org/obo/FBbi_00000349> (ANSOM)
+# Class: <http://purl.obolibrary.org/obo/FBbi_00000349> (apertureless nearfield scanning optical microscopy)
 
-AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00000349> "Aperture-less NSOM.")
+AnnotationAssertion(Annotation(rdfs:comment "PMID: 29296474") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00000349> "Aperture-less NSOM.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/FBbi_00000349> "jm")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/FBbi_00000349> "2010-03-09T10:20:01Z")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000349> "ANSOM")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000349> "ASNOM")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000349> "apertureless scanning near-field optical microscopy")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/FBbi_00000349> "image")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/FBbi_00000349> "FBbi:00000349")
-AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00000349> "ANSOM")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00000349> "apertureless nearfield scanning optical microscopy")
 SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00000349> <http://purl.obolibrary.org/obo/FBbi_00000348>)
 
 # Class: <http://purl.obolibrary.org/obo/FBbi_00000350> (polarized light illumination)

From ec32c6d705664b0566fb7a58e3f8be3f0c4c4a2f Mon Sep 17 00:00:00 2001
From: Tiago Lubiana <tiago.lubiana.alves@usp.br>
Date: Fri, 8 May 2026 06:07:24 -0300
Subject: [PATCH 2/2] Fix reference

---
 src/ontology/fbbi-edit.owl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/ontology/fbbi-edit.owl b/src/ontology/fbbi-edit.owl
index 8497067..4f40bfc 100644
--- a/src/ontology/fbbi-edit.owl
+++ b/src/ontology/fbbi-edit.owl
@@ -3564,7 +3564,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00000348> <http://purl.obolibrar
 
 # Class: <http://purl.obolibrary.org/obo/FBbi_00000349> (apertureless nearfield scanning optical microscopy)
 
-AnnotationAssertion(Annotation(rdfs:comment "PMID: 29296474") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00000349> "Aperture-less NSOM.")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PMID:29296474") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FBbi_00000349> "Aperture-less NSOM.")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#created_by> <http://purl.obolibrary.org/obo/FBbi_00000349> "jm")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#creation_date> <http://purl.obolibrary.org/obo/FBbi_00000349> "2010-03-09T10:20:01Z")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00000349> "ANSOM")