Issues

• update to use taxtastic 0.10.0

  fhcrc/deenurp#74 · Filter by author nhoffman opened on May 11, 2023

• python3 support

  fhcrc/deenurp#70 · Filter by author nhoffman opened on Apr 22, 2021
  2

  

• filter_outliers should retain outlier alleles if other alleles are not outliers

  fhcrc/deenurp#69 · Filter by author nhoffman opened on Jul 31, 2019

• filter_outliers fails with a strange message of a missing file

  enhancement
  fhcrc/deenurp#64 · Filter by author ralsallaq opened on Jul 24, 2018
  4

• iterative filtering in filter_outliers

  fhcrc/deenurp#63 · Filter by author nhoffman opened on Apr 9, 2018
  

• externally-defined criteria for keeping/dropping records

  fhcrc/deenurp#57 · Filter by author nhoffman opened on Jan 5, 2017
  

• add subcommand to dereplicate reference seqs

  enhancement
  fhcrc/deenurp#54 · Filter by author nhoffman opened on Apr 22, 2016
  

• filter_outliers: deduplicate sequences as part of filtering operation

  fhcrc/deenurp#48 · Filter by author nhoffman opened on Feb 20, 2016

• faster fill_lonely

  fhcrc/deenurp#37 · Filter by author nhoffman opened on Oct 12, 2015

• pairwise_distances fails for some sequence names

  bug
  fhcrc/deenurp#17 · Filter by author tyleraland opened on Jan 6, 2015

• aligner choice in filter-outliers

  fhcrc/deenurp#15 · Filter by author nhoffman opened on Nov 18, 2014

• search-sequences falls back to top hit if no matches above --select-threshold

  enhancement
  fhcrc/deenurp#13 · Filter by author crosenth opened on Jul 21, 2014
  1

• Support task- and process-level parallelism

  enhancement
  fhcrc/deenurp#9 · Filter by author cmccoy opened on Jan 30, 2014
  

• Fastphylo to calculate distance matrices for filtering?

  fhcrc/deenurp#6 · Filter by author nhoffman opened on Dec 9, 2013
  4