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Tabima + publisher: Mycological Progress + date: '2025-10-03' + link: https://doi.org/g97cmz + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1093/g3journal/jkaf152 + title: Dissecting the function of the DNMT2-homolog (DNMA) in Dictyostelium discoideum + authors: + - Zaza Gelashvili + - Denis A Larochelle + - Jacqueline M Dresch + - Maddison Hincher + - Javier F Tabima + - Robert A Drewell + publisher: 'G3: Genes, Genomes, Genetics' + date: '2025-07-04' + link: https://doi.org/g97cm2 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2025.07.08.659677 + title: "Characterization of a core fungal community and captivity-induced \u201C\ + mycobiome\u201D change in Fowler\u2019s Toad (Anaxyrus fowleri)" + authors: + - Alexander J Bradshaw + - Sinlan Poo + - Tracey E. Malter + - Rylie M. Strasbaugh + - Brianna Bodner + - Madison R. Hincher + - Anne Devan-Song + - Javier F. Tabima + publisher: Cold Spring Harbor Laboratory + date: '2025-07-08' + link: https://doi.org/g97cm3 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2025.03.31.646025 + title: Unraveling the Genomic and Phylogenetic Complexity of the understudied microfungus + Basidiobolus: Insights from 19 Newly Sequenced Genomes + authors: + - Jasper P. Carleton + - Alexander J. Bradshaw + - Liam Cleary + - Madison R. Hincher + - Kathryn Bushley + - Javier F. Tabima + publisher: Cold Spring Harbor Laboratory + date: '2025-04-05' + link: https://doi.org/g97cm4 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2025.04.01.646624 + title: Effects of urbanization on the microbial fungal communities from water, sediment, + and amphibian hosts across a rural-to-urban waterway in Worcester, Massachusetts + authors: + - Sara J. Wheeler + - Manning DelCogliano + - Brennan Hare + - Alexander J. Bradshaw + - Madison R. Hincher + - Jasper P. Carleton + - Philip J. Bergmann + - Nathan Ahlgren + - Javier F. Tabima + publisher: Cold Spring Harbor Laboratory + date: '2025-04-02' + link: https://doi.org/g97cm5 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1080/00275514.2025.2455909 + title: "Ubiquity and diversity of\n Basidiobolus\n \ + \ across amphibian species inhabiting an urbanization gradient" + authors: + - Madison R. Hincher + - Jasper P. Carleton + - Sara J. Wheeler + - Manning DelCogliano + - Kaitlyn Mathis + - Javier F. Tabima + publisher: Mycologia + date: '2025-02-28' + link: https://doi.org/g97cm6 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/ecog.07012 + title: Climatic variability, spatial heterogeneity and the presence of multiple + hosts drive the population structure of the pathogen Phytophthora ramorum + and the epidemiology of Sudden Oak Death + authors: + - Melina Kozanitas + - Brian J. Knaus + - Javier F. Tabima + - "Niklaus J. Gr\xFCnwald" + - Matteo Garbelotto + publisher: Ecography + date: '2024-01-31' + link: https://doi.org/g97cm7 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1128/msphere.00475-23 + title: 'Herptile gut microbiomes: a natural system to study multi-kingdom interactions + between filamentous fungi and bacteria' + authors: + - "Lluvia Vargas-Gast\xE9lum" + - Alexander S. Romer + - Marjan Ghotbi + - Jason W. Dallas + - N. Reed Alexander + - Kylie C. Moe + - Kerry L. McPhail + - George F. Neuhaus + - Leila Shadmani + - Joseph W. Spatafora + - Jason E. Stajich + - Javier F. Tabima + - Donald M. Walker + publisher: mSphere + date: '2024-03-26' + link: https://doi.org/g97cm8 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.fsi.2024.109580 + title: Population-level immunologic variation in wild threespine stickleback (Gasterosteus + aculeatus) + authors: + - Anika M. Wohlleben + - Javier F. Tabima + - "N\xE9va P. Meyer" + - Natalie C. Steinel + publisher: Fish & Shellfish Immunology + date: '2024-06-01' + link: https://doi.org/g97cm9 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2023.07.18.547692 + title: "Exploring Gene Expression Patterns and Evolutionary Responses in Host-Parasite\ + \ inteactions: Insights from theSchistocephalus solidus\u2013 Threespine\ + \ stickleback System" + authors: + - Anika M. Wohlleben + - Javier F. Tabima + - "N\xE9va P. Meyer" + - Natalie C. Steinel + publisher: Cold Spring Harbor Laboratory + date: '2023-07-19' + link: https://doi.org/g97cnb + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/MPMI-06-22-0133-R + title: Comparative Genomic Analysis of 31 Phytophthora Genomes Reveals Genome + Plasticity and Horizontal Gene Transfer + authors: + - Brent A. Kronmiller + - Nicolas Feau + - Danyu Shen + - Javier F. Tabima + - Shahin S. Ali + - "Andrew\_D. Armitage" + - Felipe Arredondo + - Bryan A. Bailey + - Stephanie R. Bollmann + - Angela Dale + - "Richard\_J. Harrison" + - Kelly Hrywkiw + - Takao Kasuga + - Rebecca McDougal + - Charlotte F. Nellist + - Preeti Panda + - Sucheta Tripathy + - Nari M. Williams + - Wenwu Ye + - Yuanchao Wang + - "Richard\_C. Hamelin" + - "Niklaus J. Gr\xFCnwald" + publisher: "Molecular Plant-Microbe Interactions\xAE" + date: '2023-01-01' + link: https://doi.org/g97cnc + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PHP-11-22-0119-BR + title: First Report of Pyricularia oryzae Causing Gray Leaf Spot of Perennial + Ryegrass (Lolium perenne) in Oregon + authors: + - E. Braithwaite + - R. Wang + - A. Kowalewski + - J. F. Tabima + - T. N. Temple + - H. M. Rivedal + publisher: Plant Health Progress + date: '2023-01-01' + link: https://doi.org/g97cnd + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2023.08.23.554450 + title: 'Herptile gut microbiomes: a natural system to study multi-kingdom interactions + between filamentous fungi and bacteria' + authors: + - "Lluvia Vargas-Gast\xE9lum" + - Alexander S. Romer + - N. Reed Alexander + - Marjan Ghotbi + - Kylie C. Moe + - Kerry L. McPhail + - George F. Neuhaus + - Leila Shadmani + - Joseph W. Spatafora + - Jason E. Stajich + - Javier F. Tabima + - Donald M. Walker + publisher: Cold Spring Harbor Laboratory + date: '2023-08-25' + link: https://doi.org/gsnctc + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PDIS-08-22-1965-RE + title: Rapid New Diagnostic LAMP (Loop-Mediated Isothermal Amplification) Assays + to Distinguish Among the Four Lineages of Phytophthora ramorum + authors: + - "Kelsey L. S\xF8ndreli" + - Javier F. Tabima + - Jared M. LeBoldus + publisher: Plant Disease + date: '2023-10-31' + link: https://doi.org/g97cnf + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/MPMI-07-23-0091-R + title: Secreted Effector Proteins of Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina + musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways + authors: + - Yao Zhao + - Xinyue Zheng + - Javier F. Tabima + - Sheng Zhu + - "Kelsey L. S\xF8ndreli" + - Hope Hundley + - Diane Bauer + - Kerrie Barry + - Yaxin Zhang + - Jeremy Schmutz + - Yuanchao Wang + - Jared M. LeBoldus + - Qin Xiong + publisher: "Molecular Plant-Microbe Interactions\xAE" + date: '2023-12-01' + link: https://doi.org/g97cng + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1093/nargab/lqad035 + title: The Dictyostelium discoideum genome lacks significant DNA methylation + and uncovers palindromic sequences as a source of false positives in bisulfite + sequencing + authors: + - Robert A Drewell + - Tayla C Cormier + - Jacob L Steenwyk + - James St Denis + - "Javier\_F Tabima" + - "Jacqueline\_M Dresch" + - "Denis\_A Larochelle" + publisher: NAR Genomics and Bioinformatics + date: '2023-03-29' + link: https://doi.org/g97cnh + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PDIS-09-20-2090-RE + title: Identity and Pathogenicity of Fungi Associated with Root, Crown, and Vascular + Symptoms Related to Winter Squash Yield Decline + authors: + - Hannah M. Rivedal + - Javier F. Tabima + - Alexandra G. Stone + - Kenneth B. Johnson + publisher: Plant Disease + date: '2022-06-01' + link: https://doi.org/g97cnj + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PHYTO-05-21-0191-R + title: Genetic Diversity and Aggressiveness of Fusarium virguliforme Isolates + Across the Midwestern United States + authors: + - Rodrigo A. Olarte + - Rebecca Hall + - Javier F. Tabima + - Dean Malvick + - Kathryn Bushley + publisher: "Phytopathology\xAE" + date: '2022-06-01' + link: https://doi.org/g97cnk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1128/mra.00151-22 + title: "Genome Sequence of the Estuarine\n Synechococcus\n \ + \ sp. Strain NB0720_010" + authors: + - Campbell A. MacKenzie + - Marcia F. Marston + - Javier F. Tabima + - Nathan A. Ahlgren + publisher: Microbiology Resource Announcements + date: '2022-08-18' + link: https://doi.org/g7hgf2 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1021/acs.jnatprod.2c00153 + title: Tolypocladamide H and the Proposed Tolypocladamide NRPS in Tolypocladium + Species + authors: + - Richard M. Tehan + - Rheannon R. Blount + - Ryan L. Goold + - Daphne R. Mattos + - Nicolas R. Spatafora + - Javier F. Tabima + - Romina Gazis + - Chengshu Wang + - Jane E. Ishmael + - Joseph W. Spatafora + - Kerry L. McPhail + publisher: Journal of Natural Products + date: '2022-05-02' + link: https://doi.org/g97cnm + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3390/plants10030572 + title: QTL Analysis of Adult Plant Resistance to Stripe Rust in a Winter Wheat Recombinant + Inbred Population + authors: + - Kali M. Brandt + - Xianming Chen + - Javier F. Tabima + - Deven R. See + - Kelly J. Vining + - Robert S. Zemetra + publisher: Plants + date: '2021-03-18' + link: https://doi.org/g97cnn + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PHYTO-06-20-0232-FI + title: Molecular Phylogenomics and Population Structure of Phytophthora pluvialis + authors: + - Javier F. Tabima + - Lilah Gonen + - "Mireia G\xF3mez-Gallego" + - Preeti Panda + - "Niklaus J. Gr\xFCnwald" + - Everett M. Hansen + - Rebecca McDougal + - Jared M. LeBoldus + - Nari M. Williams + publisher: "Phytopathology\xAE" + date: '2021-01-01' + link: https://doi.org/ghpcdk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3389/ffgc.2021.695981 + title: Spatial Genetic Structure of the Insect-Vectored Conifer Pathogen Leptographium + wageneri Suggests Long Distance Gene Flow Among Douglas-fir Plantations in Western + Oregon + authors: + - Patrick I. Bennett + - Javier F. Tabima + - Anna L. Leon + - John Browning + - Michael J. Wingfield + - Jared M. LeBoldus + publisher: Frontiers in Forests and Global Change + date: '2021-07-28' + link: https://doi.org/g97cnp + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1186/s12866-020-02066-1 + title: The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved + in virulence and in vitro motility + authors: + - Nathaly Andrea Montenegro Benavides + - Alejandro Alvarez B. + - Mario L. Arrieta-Ortiz + - Luis Miguel Rodriguez-R + - David Botero + - Javier Felipe Tabima + - Luisa Castiblanco + - Cesar Trujillo + - Silvia Restrepo + - Adriana Bernal + publisher: BMC Microbiology + date: '2021-01-06' + link: https://doi.org/gpcjgk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1534/g3.120.401516 title: Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal @@ -18,9 +447,27 @@ publisher: G3 Genes|Genomes|Genetics date: '2020-09-01' link: https://doi.org/gmnrnq + orcid: 0000-0002-3603-2691 + plugin: sources.py + file: sources.yaml image: https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/g3journal/10/9/10.1534_g3.120.401516/7/m_3417f3.jpeg tags: - Basidiobolus SM Genomics +- id: doi:10.1128/mBio.00326-20 + title: Genome-Wide Increased Copy Number is Associated with Emergence of Dominant + Clones of the Irish Potato Famine Pathogen Phytophthora infestans + authors: + - Brian J. Knaus + - Javier F. Tabima + - Shankar K. Shakya + - Howard S. Judelson + - "Niklaus J. Gr\xFCnwald" + publisher: mBio + date: '2020-06-30' + link: https://doi.org/ghpdwr + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1126/science.aba5256 title: Unexpected conservation and global transmission of agrobacterial virulence plasmids @@ -36,9 +483,88 @@ - Melodie L. Putnam - Jeff H. Chang publisher: Science - date: '2020-06-04' + date: '2020-06-05' link: https://doi.org/gg78hv + orcid: 0000-0002-3603-2691 + plugin: sources.py + file: sources.yaml image: https://www.science.org/cms/10.1126/science.aba5256/asset/1559f60b-f99a-4a15-b040-b1c611e6652c/assets/graphic/368_aba5256_fa.jpeg +- id: doi:10.1101/2020.04.08.030916 + title: Phylogenomic analyses of non-Dikarya fungi supports horizontal gene transfer + driving diversification of secondary metabolism in the amphibian gastrointestinal + symbiont, Basidiobolus + authors: + - Javier Felipe Tabima + - Ian A. Trautman + - Ying Chang + - Yan Wang + - Stephen J. Mondo + - Asaf Salamov + - Igor V. Grigoriev + - Jason E. Stajich + - Joseph W. Spatafora + publisher: Cold Spring Harbor Laboratory + date: '2020-04-09' + link: https://doi.org/gk3q7q + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.18261/issn.1891-943x-2020-02-03 + title: Designing a Socio-Cultural Approachfor Teaching and Learning Computational + Thinking + authors: + - "Francisco Buitrago-Fl\xF3rez" + - Giovanna Danies + - Javier Tabima + - Silvia Restrepo + - "Carola Hern\xE1ndez" + publisher: Nordic Journal of Digital Literacy + date: '2020-07-02' + link: https://doi.org/g97cnq + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1080/07060661.2019.1626910 + title: "From genomes to forest management \u2013 tackling invasivePhytophthoraspecies\ + \ in the era of genomics" + authors: + - "S. Keri\xF6" + - H. A. Daniels + - "M. G\xF3mez-Gallego" + - J. F. Tabima + - R. R. Lenz + - "K. L. S\xF8ndreli" + - "N. J. Gr\xFCnwald" + - N. Williams + - R. Mcdougal + - J. M. LeBoldus + publisher: Canadian Journal of Plant Pathology + date: '2019-07-26' + link: https://doi.org/g97cnr + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3389/fmicb.2020.00490 + title: Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates + Pathogenicity Is Associated With Transcriptional Variation in Three Key Races + authors: + - Thomas M. Adams + - Andrew D. Armitage + - Maria K. Sobczyk + - Helen J. Bates + - Javier F. Tabima + - Brent A. Kronmiller + - Brett M. Tyler + - "Niklaus J. Gr\xFCnwald" + - Jim M. Dunwell + - Charlotte F. Nellist + - Richard J. Harrison + publisher: Frontiers in Microbiology + date: '2020-04-15' + link: https://doi.org/gnq3sn + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1094/MPMI-05-19-0131-R title: Population Genomic Analyses Reveal Connectivity via Human-Mediated Transport across Populus Plantations in North America and an Undescribed Subpopulation @@ -54,4 +580,725 @@ publisher: "Molecular Plant-Microbe Interactions\xAE" date: '2020-02-01' link: https://doi.org/gmtx6g + orcid: 0000-0002-3603-2691 + plugin: sources.py + file: sources.yaml image: https://apsjournals.apsnet.org/cms/10.1094/MPMI-05-19-0131-R/asset/images/medium/mpmi-05-19-0131-r_f1.gif +- id: doi:10.1101/860619 + title: Genomic investigation of the strawberry pathogen Phytophthora fragariae + indicates pathogenicity is associated with transcriptional variation in three + key races + authors: + - Thomas M. Adams + - Andrew D. Armitage + - Maria K. Sobczyk + - Helen J. Bates + - Javier F. Tabima + - Brent A. Kronmiller + - Brett M. Tyler + - "Niklaus J. Gr\xFCnwald" + - Jim M. Dunwell + - Charlotte F. Nellist + - Richard J. Harrison + publisher: Cold Spring Harbor Laboratory + date: '2019-11-30' + link: https://doi.org/gkwqmm + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/MPMI-10-18-0279-TA + title: 'effectR: An Expandable R Package to Predict Candidate RxLR and CRN + Effectors in Oomycetes Using Motif Searches' + authors: + - Javier F. Tabima + - "Niklaus J. Gr\xFCnwald" + publisher: "Molecular Plant-Microbe Interactions\xAE" + date: '2019-09-01' + link: https://doi.org/gpf9d9 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/633701 + title: Genome-wide increased copy number is associated with emergence of super-fit + clones of the Irish potato famine pathogen Phytophthora infestans + authors: + - Brian J. Knaus + - Javier F. Tabima + - Shankar K. Shakya + - Howard S. Judelson + - "Niklaus J. Gr\xFCnwald" + publisher: Cold Spring Harbor Laboratory + date: '2019-05-16' + link: https://doi.org/gkw253 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1128/mBio.02452-18 + title: "Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest\ + \ Pathogen\n Phytophthora ramorum" + authors: + - Angela L. Dale + - Nicolas Feau + - Sydney E. Everhart + - Braham Dhillon + - Barbara Wong + - Julie Sheppard + - Guillaume J. Bilodeau + - Avneet Brar + - Javier F. Tabima + - Danyu Shen + - Clive M. Brasier + - Brett M. Tyler + - "Niklaus J. Gr\xFCnwald" + - Richard C. Hamelin + publisher: mBio + date: '2019-04-30' + link: https://doi.org/ghpdws + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1128/mBio.01280-18 + title: Evolution of the U.S. Biological Select Agent Rathayibacter toxicus + authors: + - Edward W. Davis + - Javier F. Tabima + - Alexandra J. Weisberg + - Lucas Dantas Lopes + - Michele S. Wiseman + - Michael S. Wiseman + - Tal Pupko + - Michael S. Belcher + - Aaron J. Sechler + - Matt A. Tancos + - Brenda K. Schroeder + - Timothy D. Murray + - Douglas G. Luster + - William L. Schneider + - Elizabeth E. Rogers + - Fernando D. Andreote + - "Niklaus J. Gr\xFCnwald" + - Melodie L. Putnam + - Jeff H. Chang + publisher: mBio + date: '2018-09-05' + link: https://doi.org/gg78hg + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/398404 + title: 'effectR: An expandable R package to predict candidate effectors' + authors: + - Javier F. Tabima + - "Niklaus J. Gr\xFCnwald" + publisher: Cold Spring Harbor Laboratory + date: '2018-08-23' + link: https://doi.org/gkxb67 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/MPMI-10-17-0258-R + title: Populations of Phytophthora rubi Show Little Differentiation and High + Rates of Migration Among States in the Western United States + authors: + - Javier F. Tabima + - Michael D. Coffey + - Inga A. Zazada + - "Niklaus J. Gr\xFCnwald" + publisher: "Molecular Plant-Microbe Interactions\xAE" + date: '2018-06-01' + link: https://doi.org/gdbjfw + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/ppa.12812 + title: Genetic diversity of Phytophthora pluvialis, a pathogen of conifers, + in New Zealand and the west coast of the United States of America + authors: + - S. Brar + - J. F. Tabima + - R. L. McDougal + - "P.\u2010Y. Dupont" + - N. Feau + - R. C. Hamelin + - P. Panda + - J. M. LeBoldus + - "N. J. Gr\xFCnwald" + - E. M. Hansen + - R. E. Bradshaw + - N. M. Williams + publisher: Plant Pathology + date: '2018-01-30' + link: https://doi.org/gnzg42 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3767/persoonia.2018.41.03 + title: Phytophthora betacei, a new species within Phytophthora clade + 1c causing late blight on Solanum betaceum in Colombia + authors: + - M.F. Mideros + - D.A. Turissini + - "N. Guayaz\xE1n" + - H. Ibarra-Avila + - G. Danies + - "M. C\xE1rdenas" + - K. Myers + - J. Tabima + - E.M. Goss + - A. Bernal + - L.E. Lagos + - A. Grajales + - L.N. Gonzalez + - D.E.L. Cooke + - W.E. Fry + - "N. Gr\xFCnwald" + - D.R. Matute + - S. Restrepo + publisher: Persoonia - Molecular Phylogeny and Evolution of Fungi + date: '2018-12-18' + link: https://doi.org/g74tph + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/115824 + title: Whole genome sequences of the raspberry and strawberry pathogensPhytophthora + rubiandP. fragariae + authors: + - Javier F. Tabima + - Brent A. Kronmiller + - Caroline M. Press + - Brett M. Tyler + - Inga A. Zasada + - "Niklaus J. Gr\xFCnwald" + publisher: Cold Spring Harbor Laboratory + date: '2017-03-10' + link: https://doi.org/gkvtcm + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/MPMI-04-17-0081-A + title: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora + rubi and P. fragariae + authors: + - Javier F. Tabima + - Brent A. Kronmiller + - Caroline M. Press + - Brett M. Tyler + - Inga A. Zasada + - "Niklaus J. Gr\xFCnwald" + publisher: "Molecular Plant-Microbe Interactions\xAE" + date: '2017-10-01' + link: https://doi.org/gnq3tp + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.chom.2016.09.010 + title: A Covert Operation by a Plant Pathogen + authors: + - "Jeff\_H. Chang" + - "Javier\_F. Tabima" + publisher: Cell Host & Microbe + date: '2016-10-01' + link: https://doi.org/g97cns + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7717/peerj.2279 + title: 'Microbe-ID: an open source toolbox for microbial genotyping and species + identification' + authors: + - Javier F. Tabima + - Sydney E. Everhart + - Meredith M. Larsen + - Alexandra J. Weisberg + - Zhian N. Kamvar + - Matthew A. Tancos + - Christine D. Smart + - Jeff H. Chang + - "Niklaus J. Gr\xFCnwald" + publisher: PeerJ + date: '2016-08-18' + link: https://doi.org/gg78hn + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7717/peerj.2222 + title: 'Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria' + authors: + - Edward W. Davis II + - Alexandra J. Weisberg + - Javier F. Tabima + - Niklaus J. Grunwald + - Jeff H. Chang + publisher: PeerJ + date: '2016-07-19' + link: https://doi.org/gg78hk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/pdis-11-15-1247-re + title: SNP-Based Differentiation of Phytophthora infestans Clonal Lineages + Using Locked Nucleic Acid Probes and High-Resolution Melt Analysis + authors: + - Zachariah R. Hansen + - Brian J. Knaus + - Javier F. Tabima + - Caroline M. Press + - Howard S. Judelson + - "Niklaus J. Gr\xFCnwald" + - Christine D. Smart + publisher: Plant Disease + date: '2016-07-01' + link: https://doi.org/f8rk58 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7287/peerj.preprints.1998v3 + title: 'Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria' + authors: + - Edward W Davis II + - Alexandra J Weisberg + - Javier F Tabima + - Niklaus J. Grunwald + - Jeff Chang + publisher: PeerJ + date: '2016-04-28' + link: https://doi.org/g97cnt + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7287/peerj.preprints.1998 + title: 'Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria' + authors: + - Edward W Davis II + - Alexandra J Weisberg + - Javier F Tabima + - Niklaus J. Grunwald + - Jeff Chang + publisher: PeerJ + date: '2016-04-28' + link: https://doi.org/g97cnv + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7287/peerj.preprints.2005v1 + title: 'Microbe-ID: An open source toolbox for microbial genotyping and species + identification' + authors: + - Javier F Tabima + - Sydney E Everhart + - Meredith M Larsen + - Alexandra J Weisberg + - Zhian N Kamvar + - Matthew A Tancos + - Christine D Smart + - Jeff H Chang + - "Niklaus J Gr\xFCnwald" + publisher: PeerJ + date: '2016-04-28' + link: https://doi.org/g97cnw + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7287/peerj.preprints.2005 + title: 'Microbe-ID: An open source toolbox for microbial genotyping and species + identification' + authors: + - Javier F Tabima + - Sydney E Everhart + - Meredith M Larsen + - Alexandra J Weisberg + - Zhian N Kamvar + - Matthew A Tancos + - Christine D Smart + - Jeff H Chang + - "Niklaus J Gr\xFCnwald" + publisher: PeerJ + date: '2016-04-28' + link: https://doi.org/g97cnx + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7287/peerj.preprints.1998v2 + title: 'Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria' + authors: + - Edward W Davis II + - Alexandra J Weisberg + - Javier F Tabima + - Niklaus J. Grunwald + - Jeff Chang + publisher: PeerJ + date: '2016-04-26' + link: https://doi.org/g97cnz + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.18257/raccefyn.277 + title: Evolutionary history of the group formerly known as protists using a phylogenomics + approach + authors: + - Silvia Restrepo + - Juan Enciso + - Javier Tabima + - "Diego Mauricio Ria\xF1o-Pach\xF3n" + publisher: "Revista de la Academia Colombiana de Ciencias Exactas, F\xEDsicas y\ + \ Naturales" + date: '2016-03-28' + link: https://doi.org/g58rws + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/PHYTO-10-15-0279-R + title: Genomic Analyses of Dominant U.S. Clonal Lineages ofPhytophthora infestansReveals + a Shared Common Ancestry for Clonal Lineages US11 and US18 and a Lack of Recently + Shared Ancestry Among All Other U.S. Lineages + authors: + - B. J. Knaus + - J. F. Tabima + - C. E. Davis + - H. S. Judelson + - "N. J. Gr\xFCnwald" + publisher: "Phytopathology\xAE" + date: '2016-11-01' + link: https://doi.org/g97cn2 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/jam.13079 + title: "Loop\u2010mediated isothermal amplification for detection of the tomato\ + \ and potato late blight pathogen,\n \n P\n\ + \ hytophthora infestans\n " + authors: + - Z.R. Hansen + - B.J. Knaus + - J.F. Tabima + - C.M. Press + - H.S. Judelson + - "N.J. Gr\xFCnwald" + - C.D. Smart + publisher: Journal of Applied Microbiology + date: '2016-03-17' + link: https://doi.org/g97cn3 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.funbio.2015.06.010 + title: Five new species of entomopathogenic fungi from the Amazon and evolution + of neotropical Ophiocordyceps + authors: + - Tatiana I. Sanjuan + - Ana E. Franco-Molano + - Ryan M. Kepler + - Joseph W. Spatafora + - Javier Tabima + - "A\xEDda M. Vasco-Palacios" + - Silvia Restrepo + publisher: Fungal Biology + date: '2015-10-01' + link: https://doi.org/f7s63k + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3389/fpls.2014.00594 + title: Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) + contributes to the gene repertoire catalog of the Pucciniales + authors: + - Marco A. Cristancho + - David Octavio Botero-Rozo + - William Giraldo + - Javier Tabima + - "Diego Mauricio Ria\xC3\xB1o-Pach\xC3\xB3n" + - Carolina Escobar + - Yomara Rozo + - Luis F. Rivera + - "Andr\xC3\xA9s Dur\xC3\xA1n" + - Silvia Restrepo + - Tamar Eilam + - Yehoshua Anikster + - "Alvaro L. Gait\xC3\xA1n" + publisher: Frontiers in Plant Science + date: '2014-10-31' + link: https://doi.org/gpf9sk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1146/annurev-phyto-102313-050056 + title: Speciation in Fungal and Oomycete Plant Pathogens + authors: + - Silvia Restrepo + - Javier F. Tabima + - Maria F. Mideros + - "Niklaus J. Gr\xFCnwald" + - Daniel R. Matute + publisher: Annual Review of Phytopathology + date: '2014-08-04' + link: https://doi.org/g97cn4 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1073/pnas.1401884111 + title: "The Irish potato famine pathogen\n Phytophthora infestans\n\ + \ originated in central Mexico rather than the Andes" + authors: + - Erica M. Goss + - Javier F. Tabima + - David E. L. Cooke + - Silvia Restrepo + - William E. Fry + - Gregory A. Forbes + - Valerie J. Fieland + - Martha Cardenas + - "Niklaus J. Gr\xFCnwald" + publisher: Proceedings of the National Academy of Sciences + date: '2014-06-02' + link: https://doi.org/f56rsn + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3852/106.2.260 + title: Entomopathogens of Amazonian stick insects and locusts are members of theBeauveriaspecies + complex (Cordycepssensu stricto) + authors: + - Tatiana Sanjuan + - Javier Tabima + - Silvia Restrepo + - "Thomas L\xE6ss\xF8e" + - Joseph W. Spatafora + - Ana Esperanza Franco-Molano + publisher: Mycologia + date: '2014-03-01' + link: https://doi.org/g97cn5 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3852/13-020 + title: Entomopathogens of Amazonian stick insects and locusts are members of theBeauveriaspecies + complex (Cordycepssensu stricto) + authors: + - Tatiana Sanjuan + - Javier Tabima + - Silvia Restrepo + - "Thomas L\xE6ss\xF8e" + - Joseph W. Spatafora + - Ana Esperanza Franco-Molano + publisher: Mycologia + date: '2014-03-01' + link: https://doi.org/f5z95s + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1007/978-3-319-01568-2_20 + title: Application of Genome Studies of Coffee Rust + authors: + - Marco Cristancho + - William Giraldo + - David Botero + - Javier Tabima + - Diana Ortiz + - Alejandro Peralta + - "\xC1lvaro Gait\xE1n" + - Silvia Restrepo + - "Diego Ria\xF1o" + publisher: Advances in Intelligent Systems and Computing + date: '2014-01-01' + link: https://doi.org/g97cn6 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/pdis-11-13-1130-re + title: Pathogenicity, Fungicide Resistance, and Genetic Variability ofPhytophthora + rubiIsolates from Raspberry (Rubus idaeus) in the Western United States + authors: + - Jane E. Stewart + - Duncan Kroese + - Javier F. Tabima + - Meredith M. Larsen + - Valerie J. Fieland + - Caroline M. Press + - Inga A. Zasada + - "Niklaus J. Gr\xFCnwald" + publisher: Plant Disease + date: '2014-12-01' + link: https://doi.org/f6xp84 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1007/978-3-662-44056-8_8 + title: Phytophthora ramorum + authors: + - Sydney E. Everhart + - Javier F. Tabima + - "Niklaus J. Gr\xFCnwald" + publisher: 'Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens' + date: '2014-01-01' + link: https://doi.org/g97cn7 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.7717/peerj.281 + title: 'Poppr: an R package for genetic analysis of populations with clonal, + partially clonal, and/or sexual reproduction' + authors: + - Zhian N. Kamvar + - Javier F. Tabima + - "Niklaus J. Gr\xFCnwald" + publisher: PeerJ + date: '2014-03-04' + link: https://doi.org/c57j + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1371/journal.pone.0079704 + title: Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava + Bacterial Pathogen Xanthomonas axonopodis pv. Manihotis Strain CIO151 + authors: + - Mario L. Arrieta-Ortiz + - "Luis M. Rodr\xEDguez-R" + - "\xC1lvaro L. P\xE9rez-Quintero" + - Lucie Poulin + - "Ana C. D\xEDaz" + - Nathalia Arias Rojas + - Cesar Trujillo + - Mariana Restrepo Benavides + - Rebecca Bart + - Jens Boch + - Tristan Boureau + - Armelle Darrasse + - Perrine David + - "Thomas Dug\xE9 de Bernonville" + - Paula Fontanilla + - Lionel Gagnevin + - "Fabien Gu\xE9rin" + - "Marie-Agn\xE8s Jacques" + - Emmanuelle Lauber + - Pierre Lefeuvre + - Cesar Medina + - Edgar Medina + - Nathaly Montenegro + - "Alejandra Mu\xF1oz Bodnar" + - "Laurent D. No\xEBl" + - "Juan F. Ortiz Qui\xF1ones" + - Daniela Osorio + - Carolina Pardo + - Prabhu B. Patil + - "St\xE9phane Poussier" + - Olivier Pruvost + - "Isabelle Rob\xE8ne-Soustrade" + - Robert P. Ryan + - Javier Tabima + - Oscar G. Urrego Morales + - "Christian Verni\xE8re" + - "S\xE9bastien Carrere" + - "Val\xE9rie Verdier" + - Boris Szurek + - Silvia Restrepo + - "Camilo L\xF3pez" + - Ralf Koebnik + - Adriana Bernal + publisher: PLoS ONE + date: '2013-11-22' + link: https://doi.org/zw9 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3109/13693786.2013.820001 + title: 'Seborrheic dermatitis: predisposing factors and ITS2 secondary structure + forMalasseziaphylogenic analysis' + authors: + - Yulien Amado + - "Anelvi Pati\xF1o-Uzc\xE1tegui" + - "Maria C. Cepero de Garc\xEDa" + - Javier Tabima + - Adriana Motta + - "Martha C\xE1rdenas" + - Adriana Bernal + - Silvia Restrepo + - Adriana Celis + publisher: Medical Mycology + date: '2013-11-01' + link: https://doi.org/g97cn8 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/j.1365-3059.2011.02530.x + title: "Defining species boundaries in the genus Phytophthora: the case of\ + \ Phytophthora andina A response to \u2018Phytophthora andina sp.\ + \ nov., a newly identified heterothallic pathogen of solanaceous hosts in the\ + \ Andean highlands\u2019 (Oliva et\_al., 2010)" + authors: + - "M. C\xE1rdenas" + - J. Tabima + - W. E. Fry + - "N. J. Gr\xFCnwald" + - A. Bernal + - S. Restrepo + publisher: Plant Pathology + date: '2011-12-04' + link: https://doi.org/dssjk9 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: issn:0120548X 19001649 + title: '' + authors: [] + publisher: '' + date: '' + link: https://portal.issn.org/resource/ISSN/0120548X 19001649 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1038/jid.2011.178 + title: Virulence Gene Expression in Malassezia spp from Individuals with Seborrheic + Dermatitis + authors: + - "Anelvi Pati\xF1o-Uzc\xE1tegui" + - Yulien Amado + - "Maria Cepero de Garc\xEDa" + - Diego Chaves + - Javier Tabima + - Adriana Motta + - "Martha C\xE1rdenas" + - Adriana Bernal + - Silvia Restrepo + - Adriana Celis + publisher: Journal of Investigative Dermatology + date: '2011-10-01' + link: https://doi.org/bnc45k + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.virusres.2011.04.011 + title: Phylogeography and molecular epidemiology of Papaya ringspot virus + authors: + - X.A. Olarte Castillo + - G. Fermin + - J. Tabima + - Y. Rojas + - P.F. Tennant + - M. Fuchs + - R. Sierra + - A.J. Bernal + - S. Restrepo + publisher: Virus Research + date: '2011-08-01' + link: https://doi.org/btq3f7 + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1094/pdis-11-10-0853 + title: First Report of Phytophthora infestans Causing Late Blight on Solanum + viarum in Colombia + authors: + - "M. E. C\xE1rdenas" + - E. Medina + - J. Tabima + - A. Vargas + - C. Lopera + - A. Bernal + - S. Restrepo + publisher: Plant Disease + date: '2011-07-01' + link: https://doi.org/ddfwsk + orcid: 0000-0002-3603-2691 + plugin: orcid.py + file: orcid.yaml