Utilizing scFATES with two biological conditions.

[asif7adil]

Hi,

Thank you for the awesome tool.
While I haven't tried the tool yet, I just wanted to ask you, can we use it for the scRNA-seq dataset with two biological treatment conditions? Like tradeseq and condiments in R?
something like this

Thank you!

Best,

[LouisFaure]

hey, have a look at this notebook, which contains some basic testing functions for non-branching trajectories: https://github.com/LouisFaure/scFates_notebooks/blob/main/Covariate_testing.ipynb

[asif7adil]

Thank you for responding! Apologies for getting back to you a little late. I am analyzing hematopoietic stem cells from two conditions. I am sure the branching will happen, will this notebook be useful in that case? do you have any suggestions?

Thanks!